ALL Methylation Supplementary Table 9
Genes in the common methylation signature of ALL
| Methylation probeset |
Chr |
Start |
End |
Gene |
mRNA Refseq ID |
Status |
| MSPI0406S00033551 |
chr1 |
43765535 |
43765963 |
TIE1 |
NM_005424 |
Hypermethylated |
| MSPI0406S00047441 |
chr1 |
99729433 |
99730057 |
LPPR4 |
NM_001166252 / NM_014839 |
Hypermethylated |
| MSPI0406S00054375 |
chr1 |
150209809 |
150210213 |
ANP32E |
NM_001136478 /NM_001136479 /NM_030920 |
Hypermethylated |
| MSPI0406S00114368 |
chr2 |
74758140 |
74758991 |
DQX1 |
NM_133637 |
Hypomethylated |
| MSPI0406S00114368 |
chr2 |
74758140 |
74758991 |
AUP1 |
NM_181575 |
Hypomethylated |
| MSPI0406S00114368 |
chr2 |
74758140 |
74758991 |
HTRA2 |
NM_013247 /NM_145074 |
Hypomethylated |
| MSPI0406S00136658 |
chr2 |
155554740 |
155554951 |
KCNJ3 |
NM_002239 |
Hypomethylated |
| MSPI0406S00163586 |
chr3 |
6902402 |
6902834 |
GRM7 |
NM_000844 / NM_181874 |
Hypermethylated |
| MSPI0406S00189293 |
chr3 |
101442882 |
101443442 |
CEP97 |
NM_024548 |
Hypermethylated |
| MSPI0406S00206872 |
chr3 |
180706718 |
180707350 |
DNAJC19 |
NM_145261 |
Hypermethylated |
| MSPI0406S00209099 |
chr3 |
185303158 |
185303485 |
SENP2 |
NM_021627 |
Hypermethylated |
| MSPI0406S00209527 |
chr3 |
186080357 |
186081059 |
DGKG |
NM_001080744 / NM_001080745 / NM_001346 |
Hypermethylated |
| MSPI0406S00276902 |
chr5 |
89704526 |
89705315 |
CETN3 |
NM_004365 |
Hypermethylated |
| MSPI0406S00284502 |
chr5 |
134073213 |
134073675 |
CAMLG |
NM_001745 |
Hypermethylated |
| MSPI0406S00287235 |
chr5 |
140242976 |
140243299 |
PCDHA11 |
NM_018902 /NM_031861 |
Hypermethylated |
| MSPI0406S00287329 |
chr5 |
140535915 |
140536611 |
PCDHB17 |
NR_001280 |
Hypermethylated |
| MSPI0406S00287350 |
chr5 |
140579044 |
140579962 |
PCDHB11 |
NM_018931 |
Hypermethylated |
| MSPI0406S00287351 |
chr5 |
140579962 |
140580502 |
PCDHB11 |
NM_018931 |
Hypermethylated |
| MSPI0406S00287436 |
chr5 |
140744981 |
140745428 |
PCDHGA5 |
NM_018918 / NM_032054 |
Hypermethylated |
| MSPI0406S00287436 |
chr5 |
140744981 |
140745428 |
PCDHGB3 |
NM_018924 / NM_032097 |
Hypermethylated |
| MSPI0406S00287891 |
chr5 |
141392900 |
141393794 |
GNPDA1 |
NM_005471 |
Hypomethylated |
| MSPI0406S00300233 |
chr5 |
177423738 |
177423997 |
PROP1 |
NM_006261 |
Hypermethylated |
| MSPI0406S00312956 |
chr6 |
25138315 |
25139939 |
CMAH |
NR_002174 / NR_027626 |
Hypermethylated |
| MSPI0406S00313668 |
chr6 |
27101671 |
27102483 |
HIST1H2BJ |
NM_021058 |
Hypomethylated |
| MSPI0406S00313668 |
chr6 |
27101671 |
27102483 |
HIST1H2AG |
NM_021064 |
Hypomethylated |
| MSPI0406S00313668 |
chr6 |
27101671 |
27102483 |
HIST1H4I |
NM_003495 |
Hypomethylated |
| MSPI0406S00327661 |
chr6 |
71376647 |
71377392 |
SMAP1 |
NM_001044305 / NM_021940 |
Hypermethylated |
| MSPI0406S00331617 |
chr6 |
96463499 |
96463874 |
FUT9 |
NM_006581 |
Hypermethylated |
| MSPI0406S00333064 |
chr6 |
106773679 |
106774170 |
ATG5 |
NM_004849 |
Hypermethylated |
| MSPI0406S00346373 |
chr6 |
160680891 |
160681505 |
SLC22A2 |
NM_003058 |
Hypermethylated |
| MSPI0406S00363123 |
chr7 |
27183696 |
27184157 |
HOXA5 |
NM_019102 |
Hypermethylated |
| MSPI0406S00363123 |
chr7 |
27183696 |
27184157 |
HOXA6 |
NM_024014 |
Hypermethylated |
| MSPI0406S00372326 |
chr7 |
56174388 |
56175223 |
CHCHD2 |
NM_016139 |
Hypermethylated |
| MSPI0406S00396886 |
chr7 |
134330441 |
134330836 |
BPGM |
NM_001724 / NM_199186 |
Hypermethylated |
| MSPI0406S00425232 |
chr8 |
41434895 |
41435387 |
AGPAT6 |
NM_178819 |
Hypermethylated |
| MSPI0406S00429517 |
chr8 |
57026732 |
57027299 |
MOS |
NM_005372 |
Hypermethylated |
| MSPI0406S00429579 |
chr8 |
57233598 |
57234355 |
SDR16C5 |
NM_138969 |
Hypermethylated |
| MSPI0406S00441641 |
chr8 |
124084236 |
124084728 |
WDR67 |
NM_001145088 / NM_145647 |
Hypermethylated |
| MSPI0406S00441831 |
chr8 |
124428126 |
124428638 |
WDYHV1 |
NM_018024 |
Hypermethylated |
| MSPI0406S00456924 |
chr9 |
23822613 |
23823089 |
ELAVL2 |
NM_004432 |
Hypermethylated |
| MSPI0406S00458933 |
chr9 |
34459232 |
34459602 |
C9orf25 |
NM_147202 |
Hypermethylated |
| MSPI0406S00458933 |
chr9 |
34459232 |
34459602 |
DNAI1 |
NM_012144 |
Hypermethylated |
| MSPI0406S00460735 |
chr9 |
37904664 |
37905009 |
MCART1 |
NR_024872 / NR_024873 / NM_033412 |
Hypermethylated |
| MSPI0406S00501433 |
chr10 |
7859702 |
7860348 |
TAF3 |
NM_031923 |
Hypermethylated |
| MSPI0406S00519670 |
chr10 |
70747999 |
70748453 |
KIAA1279 |
NM_015634 |
Hypermethylated |
| MSPI0406S00520388 |
chr10 |
71811620 |
71812475 |
H2AFY2 |
NM_018649 |
Hypermethylated |
| MSPI0406S00531953 |
chr10 |
102289691 |
102290274 |
NDUFB8 |
NM_005004 |
Hypermethylated |
| MSPI0406S00533558 |
chr10 |
104535364 |
104536033 |
C10orf26 |
NM_017787 |
Hypermethylated |
| MSPI0406S00540894 |
chr10 |
125425209 |
125425606 |
GPR26 |
NM_153442 |
Hypermethylated |
| MSPI0406S00558409 |
chr11 |
27384912 |
27385612 |
CCDC34 |
NM_030771 / NM_080654 |
Hypermethylated |
| MSPI0406S00560067 |
chr11 |
34533292 |
34534291 |
ELF5 |
NM_001422 / NM_198381 |
Hypermethylated |
| MSPI0406S00561064 |
chr11 |
40315539 |
40316098 |
LRRC4C |
NM_020929 |
Hypermethylated |
| MSPI0406S00586694 |
chr11 |
113928943 |
113929741 |
ZBTB16 |
NM_006006 /NM_001018011 |
Hypermethylated |
| MSPI0406S00592000 |
chr11 |
124542208 |
124542682 |
SIAE |
NM_170601 |
Hypermethylated |
| MSPI0406S00592000 |
chr11 |
124542208 |
124542682 |
SPA17 |
NM_017425 |
Hypermethylated |
| MSPI0406S00606629 |
chr12 |
29935450 |
29936014 |
TMTC1 |
NM_175861 |
Hypermethylated |
| MSPI0406S00612910 |
chr12 |
52462629 |
52463347 |
C12orf44 |
NM_001098673 /NM_021934 |
Hypermethylated |
| MSPI0406S00644381 |
chr13 |
21751219 |
21751781 |
SKA3 |
NM_001166017 /NM_145061 |
Hypermethylated |
| MSPI0406S00644381 |
chr13 |
21751219 |
21751781 |
MRP63 |
NM_024026 |
Hypermethylated |
| MSPI0406S00653659 |
chr13 |
52378546 |
52379111 |
DHRS12 |
NM_024705 / NM_001031719 |
Hypermethylated |
| MSPI0406S00668515 |
chr14 |
23235280 |
23235901 |
OXA1L |
NM_005015 |
Hypermethylated |
| MSPI0406S00668987 |
chr14 |
23789511 |
23790114 |
PABPN1 |
NM_004643 |
Hypermethylated |
| MSPI0406S00680432 |
chr14 |
70656074 |
70656983 |
SLC8A3 |
NM_033262 / NM_058240 / NM_182932 / NM_183002 |
Hypermethylated |
| MSPI0406S00704116 |
chr15 |
32933864 |
32934484 |
SCG5 |
NM_001144757 / NM_003020 |
Hypermethylated |
| MSPI0406S00755815 |
chr16 |
31482830 |
31483291 |
TGFB1I1 |
NM_001042454 / NM_001164719 / NM_015927 |
Hypermethylated |
| MSPI0406S00762508 |
chr16 |
58664013 |
58664819 |
CNOT1 |
NM_016284 / NM_206999 |
Hypermethylated |
| MSPI0406S00785511 |
chr17 |
4400482 |
4400882 |
SPNS2 |
NM_001124758 |
Hypomethylated |
| MSPI0406S00803475 |
chr17 |
35765935 |
35766548 |
ACACA |
NM_198834 / NM_198839 |
Hypermethylated |
| MSPI0406S00803475 |
chr17 |
35765935 |
35766548 |
TADA2A |
NM_001166105 / NM_001488 / NM_133439 |
Hypermethylated |
| MSPI0406S00808861 |
chr17 |
42144066 |
42144522 |
LSM12 |
NM_152344 |
Hypermethylated |
| MSPI0406S00808861 |
chr17 |
42144066 |
42144522 |
G6PC3 |
NM_138387 / NR_028581 / NR_028582 |
Hypermethylated |
| MSPI0406S00824789 |
chr17 |
72425973 |
72426791 |
GPRC5C |
NM_022036 / NM_018653 |
Hypomethylated |
| MSPI0406S00844006 |
chr18 |
21978063 |
21978580 |
OSBPL1A |
NM_080597 |
Hypermethylated |
| MSPI0406S00845949 |
chr18 |
33077934 |
33078448 |
INO80C |
NM_001098817 / NM_194281 |
Hypermethylated |
| MSPI0406S00870600 |
chr19 |
9609540 |
9610004 |
ZNF560 |
NM_152476 |
Hypermethylated |
| MSPI0406S00908309 |
chr19 |
56905050 |
56905678 |
ZNF582 |
NM_144690 |
Hypermethylated |
| MSPI0406S00911634 |
chr20 |
3189309 |
3189933 |
DDRGK1 |
NM_023935 |
Hypermethylated |
| MSPI0406S00911634 |
chr20 |
3189309 |
3189933 |
ITPA |
NM_033453 / NM_181493 |
Hypermethylated |
| MSPI0406S00925444 |
chr20 |
41819880 |
41820377 |
PTPRT |
NM_007050 / NM_133170 |
Hypermethylated |
| MSPI0406S00939726 |
chr20 |
62507539 |
62508139 |
OK/SW-cl.69 |
uc002yhe.2 |
Hypomethylated |
| MSPI0406S00990104 |
chrX |
20135218 |
20135929 |
MAP7D2 |
NM_152780 |
Hypermethylated |
| MSPI0406S00998736 |
chrX |
51485701 |
51486446 |
GSPT2 |
NM_018094 |
Hypermethylated |
| MSPI0406S01006063 |
chrX |
90690097 |
90690732 |
PABPC5 |
NM_080832 |
Hypermethylated |
| MSPI0406S01011804 |
chrX |
119737171 |
119737856 |
MCTS1 |
NM_014060 / NM_001137554 |
Hypermethylated |
| MSPI0406S01014522 |
chrX |
133680635 |
133681243 |
MGC16121 |
NR_024607 |
Hypermethylated |