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ALL Methylation Supplementary Table 9

Genes in the common methylation signature of ALL

Methylation probeset Chr Start End Gene mRNA Refseq ID Status
MSPI0406S00033551 chr1 43765535 43765963 TIE1 NM_005424 Hypermethylated
MSPI0406S00047441 chr1 99729433 99730057 LPPR4 NM_001166252 / NM_014839 Hypermethylated
MSPI0406S00054375 chr1 150209809 150210213 ANP32E NM_001136478 /NM_001136479 /NM_030920 Hypermethylated
MSPI0406S00114368 chr2 74758140 74758991 DQX1 NM_133637 Hypomethylated
MSPI0406S00114368 chr2 74758140 74758991 AUP1 NM_181575 Hypomethylated
MSPI0406S00114368 chr2 74758140 74758991 HTRA2 NM_013247 /NM_145074 Hypomethylated
MSPI0406S00136658 chr2 155554740 155554951 KCNJ3 NM_002239 Hypomethylated
MSPI0406S00163586 chr3 6902402 6902834 GRM7 NM_000844 / NM_181874 Hypermethylated
MSPI0406S00189293 chr3 101442882 101443442 CEP97 NM_024548 Hypermethylated
MSPI0406S00206872 chr3 180706718 180707350 DNAJC19 NM_145261 Hypermethylated
MSPI0406S00209099 chr3 185303158 185303485 SENP2 NM_021627 Hypermethylated
MSPI0406S00209527 chr3 186080357 186081059 DGKG NM_001080744 / NM_001080745 / NM_001346 Hypermethylated
MSPI0406S00276902 chr5 89704526 89705315 CETN3 NM_004365 Hypermethylated
MSPI0406S00284502 chr5 134073213 134073675 CAMLG NM_001745 Hypermethylated
MSPI0406S00287235 chr5 140242976 140243299 PCDHA11 NM_018902 /NM_031861 Hypermethylated
MSPI0406S00287329 chr5 140535915 140536611 PCDHB17 NR_001280 Hypermethylated
MSPI0406S00287350 chr5 140579044 140579962 PCDHB11 NM_018931 Hypermethylated
MSPI0406S00287351 chr5 140579962 140580502 PCDHB11 NM_018931 Hypermethylated
MSPI0406S00287436 chr5 140744981 140745428 PCDHGA5 NM_018918 / NM_032054 Hypermethylated
MSPI0406S00287436 chr5 140744981 140745428 PCDHGB3 NM_018924 / NM_032097 Hypermethylated
MSPI0406S00287891 chr5 141392900 141393794 GNPDA1 NM_005471 Hypomethylated
MSPI0406S00300233 chr5 177423738 177423997 PROP1 NM_006261 Hypermethylated
MSPI0406S00312956 chr6 25138315 25139939 CMAH NR_002174 / NR_027626 Hypermethylated
MSPI0406S00313668 chr6 27101671 27102483 HIST1H2BJ NM_021058 Hypomethylated
MSPI0406S00313668 chr6 27101671 27102483 HIST1H2AG NM_021064 Hypomethylated
MSPI0406S00313668 chr6 27101671 27102483 HIST1H4I NM_003495 Hypomethylated
MSPI0406S00327661 chr6 71376647 71377392 SMAP1 NM_001044305 / NM_021940 Hypermethylated
MSPI0406S00331617 chr6 96463499 96463874 FUT9 NM_006581 Hypermethylated
MSPI0406S00333064 chr6 106773679 106774170 ATG5 NM_004849 Hypermethylated
MSPI0406S00346373 chr6 160680891 160681505 SLC22A2 NM_003058 Hypermethylated
MSPI0406S00363123 chr7 27183696 27184157 HOXA5 NM_019102 Hypermethylated
MSPI0406S00363123 chr7 27183696 27184157 HOXA6 NM_024014 Hypermethylated
MSPI0406S00372326 chr7 56174388 56175223 CHCHD2 NM_016139 Hypermethylated
MSPI0406S00396886 chr7 134330441 134330836 BPGM NM_001724 / NM_199186 Hypermethylated
MSPI0406S00425232 chr8 41434895 41435387 AGPAT6 NM_178819 Hypermethylated
MSPI0406S00429517 chr8 57026732 57027299 MOS NM_005372 Hypermethylated
MSPI0406S00429579 chr8 57233598 57234355 SDR16C5 NM_138969 Hypermethylated
MSPI0406S00441641 chr8 124084236 124084728 WDR67 NM_001145088 / NM_145647 Hypermethylated
MSPI0406S00441831 chr8 124428126 124428638 WDYHV1 NM_018024 Hypermethylated
MSPI0406S00456924 chr9 23822613 23823089 ELAVL2 NM_004432 Hypermethylated
MSPI0406S00458933 chr9 34459232 34459602 C9orf25 NM_147202 Hypermethylated
MSPI0406S00458933 chr9 34459232 34459602 DNAI1 NM_012144 Hypermethylated
MSPI0406S00460735 chr9 37904664 37905009 MCART1 NR_024872 / NR_024873 / NM_033412 Hypermethylated
MSPI0406S00501433 chr10 7859702 7860348 TAF3 NM_031923 Hypermethylated
MSPI0406S00519670 chr10 70747999 70748453 KIAA1279 NM_015634 Hypermethylated
MSPI0406S00520388 chr10 71811620 71812475 H2AFY2 NM_018649 Hypermethylated
MSPI0406S00531953 chr10 102289691 102290274 NDUFB8 NM_005004 Hypermethylated
MSPI0406S00533558 chr10 104535364 104536033 C10orf26 NM_017787 Hypermethylated
MSPI0406S00540894 chr10 125425209 125425606 GPR26 NM_153442 Hypermethylated
MSPI0406S00558409 chr11 27384912 27385612 CCDC34 NM_030771 / NM_080654 Hypermethylated
MSPI0406S00560067 chr11 34533292 34534291 ELF5 NM_001422 / NM_198381 Hypermethylated
MSPI0406S00561064 chr11 40315539 40316098 LRRC4C NM_020929 Hypermethylated
MSPI0406S00586694 chr11 113928943 113929741 ZBTB16 NM_006006 /NM_001018011 Hypermethylated
MSPI0406S00592000 chr11 124542208 124542682 SIAE NM_170601 Hypermethylated
MSPI0406S00592000 chr11 124542208 124542682 SPA17 NM_017425 Hypermethylated
MSPI0406S00606629 chr12 29935450 29936014 TMTC1 NM_175861 Hypermethylated
MSPI0406S00612910 chr12 52462629 52463347 C12orf44 NM_001098673 /NM_021934 Hypermethylated
MSPI0406S00644381 chr13 21751219 21751781 SKA3 NM_001166017 /NM_145061 Hypermethylated
MSPI0406S00644381 chr13 21751219 21751781 MRP63 NM_024026 Hypermethylated
MSPI0406S00653659 chr13 52378546 52379111 DHRS12 NM_024705 / NM_001031719 Hypermethylated
MSPI0406S00668515 chr14 23235280 23235901 OXA1L NM_005015 Hypermethylated
MSPI0406S00668987 chr14 23789511 23790114 PABPN1 NM_004643 Hypermethylated
MSPI0406S00680432 chr14 70656074 70656983 SLC8A3 NM_033262 / NM_058240 / NM_182932 / NM_183002 Hypermethylated
MSPI0406S00704116 chr15 32933864 32934484 SCG5 NM_001144757 / NM_003020 Hypermethylated
MSPI0406S00755815 chr16 31482830 31483291 TGFB1I1 NM_001042454 / NM_001164719 / NM_015927 Hypermethylated
MSPI0406S00762508 chr16 58664013 58664819 CNOT1 NM_016284 / NM_206999 Hypermethylated
MSPI0406S00785511 chr17 4400482 4400882 SPNS2 NM_001124758 Hypomethylated
MSPI0406S00803475 chr17 35765935 35766548 ACACA NM_198834 / NM_198839 Hypermethylated
MSPI0406S00803475 chr17 35765935 35766548 TADA2A NM_001166105 / NM_001488 / NM_133439 Hypermethylated
MSPI0406S00808861 chr17 42144066 42144522 LSM12 NM_152344 Hypermethylated
MSPI0406S00808861 chr17 42144066 42144522 G6PC3 NM_138387 / NR_028581 / NR_028582 Hypermethylated
MSPI0406S00824789 chr17 72425973 72426791 GPRC5C NM_022036 / NM_018653 Hypomethylated
MSPI0406S00844006 chr18 21978063 21978580 OSBPL1A NM_080597 Hypermethylated
MSPI0406S00845949 chr18 33077934 33078448 INO80C NM_001098817 / NM_194281 Hypermethylated
MSPI0406S00870600 chr19 9609540 9610004 ZNF560 NM_152476 Hypermethylated
MSPI0406S00908309 chr19 56905050 56905678 ZNF582 NM_144690 Hypermethylated
MSPI0406S00911634 chr20 3189309 3189933 DDRGK1 NM_023935 Hypermethylated
MSPI0406S00911634 chr20 3189309 3189933 ITPA NM_033453 / NM_181493 Hypermethylated
MSPI0406S00925444 chr20 41819880 41820377 PTPRT NM_007050 / NM_133170 Hypermethylated
MSPI0406S00939726 chr20 62507539 62508139 OK/SW-cl.69 uc002yhe.2 Hypomethylated
MSPI0406S00990104 chrX 20135218 20135929 MAP7D2 NM_152780 Hypermethylated
MSPI0406S00998736 chrX 51485701 51486446 GSPT2 NM_018094 Hypermethylated
MSPI0406S01006063 chrX 90690097 90690732 PABPC5 NM_080832 Hypermethylated
MSPI0406S01011804 chrX 119737171 119737856 MCTS1 NM_014060 / NM_001137554 Hypermethylated
MSPI0406S01014522 chrX 133680635 133681243 MGC16121 NR_024607 Hypermethylated