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ALL Methylation Supplementary Table 7

Relationship between gene methylation and expression by chromosome in hyperdiploid samples.

Chromosome Number of Affy Probesets Number of HELP Probesets Number of hypomethylated HELP probesets Percentage of hypomethylated HELP probesets Number of hypermethylated HELP probesets Percentage of hypermethylated HELP probesets Number of high expressed Affy probesets Percentage of high expressed Affy probesets Number of high expressed and hypomethylated probesets Percentage of high expressed and hypomethylated probesets Number of high expressed and hypermethylated probesets Percentage of high expressed and hypermethylated probesets Number of low expressed Affy probesets Percentage of low expressed Affy probesets Number of low expressed and hypomethylated probesets Percentage of low expressed and hypomethylated probesets Number of low expressed and hypermethylated probesets Percentage of low expressed and hypermethylated probesets
11270133919114.26%52038.83%614.80%1626.23%3150.82%24319.13%3313.58%14459.26%
284085610912.73%36842.99%252.98%832.00%1768.00%21425.48%3616.82%13563.08%
366675011815.73%29839.73%355.26%1131.43%1851.43%14521.77%2718.62%7954.48%
44464445111.49%17138.51%10924.44%1715.60%6256.88%143.14%00.00%750.00%
5565558549.68%25245.16%264.60%27.69%934.62%8615.22%1011.63%6069.77%
677078310613.54%28836.78%20326.36%4321.18%10752.71%415.32%921.95%2048.78%
75425646311.17%23742.02%213.87%419.05%523.81%7513.84%1114.67%4560.00%
84444946312.75%17234.82%5512.39%1018.18%2443.64%388.56%615.79%1539.47%
94414839018.63%19339.96%224.99%731.82%940.91%7717.46%2329.87%3849.35%
104855268315.78%18935.93%9319.18%2021.51%4851.61%234.74%626.09%1147.83%
1170082714918.02%31037.48%355.00%1440.00%1748.57%15221.71%3221.05%7851.32%
127047538811.69%30340.24%436.11%1023.26%2046.51%11115.77%1311.71%7063.06%
13226223156.73%8638.57%135.75%430.77%753.85%4620.35%510.87%2452.17%
144284657315.70%13829.68%17741.36%3117.51%7240.68%61.40%350.00%233.33%
154154325713.19%15936.81%184.34%633.33%633.33%7417.83%1114.86%3952.70%
1652559913021.70%19332.22%183.43%738.89%844.44%13525.71%3928.89%6145.19%
1774781618022.06%25030.64%17723.69%3519.77%7944.63%222.95%29.09%940.91%
181961972010.15%7940.10%6231.63%914.52%3353.23%52.55%240.00%240.00%
1973485019522.94%28233.18%263.54%1246.15%1142.31%18124.66%4725.97%11462.98%
203373606518.06%12434.44%113.26%19.09%327.27%7722.85%1722.08%4051.95%
211591423927.46%3121.83%7748.43%2633.77%3038.96%42.52%00.00%125.00%
223273326218.67%9628.92%206.12%315.00%210.00%8425.69%2732.14%4654.76%
X4414529320.58%11525.44%23453.06%6025.64%8134.62%30.68%133.33%3100.00%
Y201915.26%421.05%210.00%00.00%2100.00%525.00%120.00%480.00%
Average517.8333333552.666666787.2916666715.33%202.416666735.22%65.12514.77%14.8333333323.85%29.2083333345.53%77.5416666714.35%15.0416666720.38%43.62553.98%
Average aneuploid3.54%21.81%47.26%
Average diploid20.83%19.52%58.01%