| Group comparison (G1 vs G2) | Enrichment of G1 hypomethylated gene set in G1 vs. G2 gene signature | Enrichment of G1 hypermethylated gene set in G2 vs. G1 gene signature | Links to the detailed GSEA Results |
| CRLF2r vs non-CRLF2r B-ALL | No (FDR=0.89) | No (FDR 1.0) | Download |
| ETV6-RUNX1 vs non-ETV6-RUNX1 B-ALL | Yes (P<0.0001; FDR=0.18) | No (FDR 0.85) | Download |
| High hyperdiploid vs non high hyperdiploid B-ALL | No (FDR=0.78) | No (FDR 0.96) | Download |
| MLLr vs non-MLLr B-ALL | No (FDR=0.53) | Yes (P<0.0001, FDR 0.0016) | Download |
| ERG B-ALL vs non-ERG B-ALL | No (FDR=0.65) | Yes (P<0.0001, FDR=0.07) | Download |
| BCR-ABL1 B-ALL vs non-BCR-ABL1 B-ALL | Yes (P<0.0001, FDR=0.0064) | No (FDR 0.87) | Download |
| TCF3-PBX1 vs non-TCF3-PBX1 B-ALL | Yes (P=0.003, FDR=0.11) | No (FDR 0.71) | Download |
| T-ALL vs B-ALL | Yes (P<0.0001, FDR=0.013) | Yes (P<0.0001, FDR=0.00097) | Download |