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ALL Methylation Supplementary Table 5b-6

List of Refseq genes with upregulated FDR<0.1 and hypermethylated FDR<0.1 in TCF3_B

Refseq Genes Possible HELP ProbeSet Useful HELP ProbeSet HELP ProbeSet FDR HELP ProbeSet FC Possible Affy ProbeSet Useful Affy ProbeSet Affy ProbeSet FDR Affy ProbeSet FC
NM_003146 SSRP1 /// P2RX3 MSPI0406S00565202 MSPI0406S00565202 0.006936798 -3.010080948 200957_s_at /// 200956_s_at 200957_s_at 0.065388122 1.301885772
NM_006825 CKAP4 MSPI0406S00625531 MSPI0406S00625531 0.074896602 -1.201219909 200999_s_at /// 200998_s_at 200999_s_at /// 200998_s_at 6.55360580507952e-05 /// 0.00839761681008506 3.36230261581932 /// 1.92907150818367
NM_006565 CTCF MSPI0406S00764799 MSPI0406S00764799 0.028868127 -3.1402883 202521_at 202521_at 0.006744683 1.373396176
NM_021953 FOXM1 /// C12orf32 MSPI0406S00598323 /// MSPI0406S00598321 /// MSPI0406S00598322 MSPI0406S00598323 6.25E-05 -2.010668879 202580_x_at 202580_x_at 0.023279698 1.948666057
NM_202002 FOXM1 /// C12orf32 MSPI0406S00598323 /// MSPI0406S00598321 /// MSPI0406S00598322 MSPI0406S00598323 6.25E-05 -2.010668879 202580_x_at 202580_x_at 0.023279698 1.948666057
NM_202003 FOXM1 /// C12orf32 MSPI0406S00598323 /// MSPI0406S00598321 /// MSPI0406S00598322 MSPI0406S00598323 6.25E-05 -2.010668879 202580_x_at 202580_x_at 0.023279698 1.948666057
NM_001031685 TP53BP2 MSPI0406S00076256 MSPI0406S00076256 0.079378301 -1.425723054 203120_at 203120_at 3.60E-05 1.934173692
NM_005426 TP53BP2 MSPI0406S00076256 MSPI0406S00076256 0.079378301 -1.425723054 203120_at 203120_at 3.60E-05 1.934173692
NM_001004722 NCK2 MSPI0406S00122908 MSPI0406S00122908 6.86E-08 -4.362474797 203315_at 203315_at 0.024873016 1.4013178
NM_003581 NCK2 MSPI0406S00122908 MSPI0406S00122908 6.86E-08 -4.362474797 203315_at 203315_at 0.024873016 1.4013178
NM_004985 KRAS MSPI0406S00605756 /// MSPI0406S00605755 MSPI0406S00605756 0.001029253 -3.529331549 204009_s_at /// 214352_s_at /// 204010_s_at 204009_s_at 0.001412528 1.689669785
NM_033360 KRAS MSPI0406S00605756 /// MSPI0406S00605755 MSPI0406S00605756 0.001029253 -3.529331549 204009_s_at /// 214352_s_at /// 204010_s_at 204009_s_at 0.001412528 1.689669785
NM_001394 DUSP4 MSPI0406S00421608 /// MSPI0406S00421607 MSPI0406S00421608 0.02590632 -2.021136785 204014_at /// 204015_s_at 204014_at /// 204015_s_at 7.87265849569283e-19 /// 1.83810058970281e-11 5.38946935637455 /// 3.31667359592937
NM_057158 DUSP4 MSPI0406S00421608 /// MSPI0406S00421607 MSPI0406S00421608 0.02590632 -2.021136785 204014_at /// 204015_s_at 204014_at /// 204015_s_at 7.87265849569283e-19 /// 1.83810058970281e-11 5.38946935637455 /// 3.31667359592937
NM_014810 CEP350 MSPI0406S00064718 /// MSPI0406S00064719 MSPI0406S00064718 0.015860519 -3.817839579 213165_at /// 213957_s_at /// 204373_s_at /// 213956_at 213165_at 0.009577625 1.466632088
NM_001126336 VCAN MSPI0406S00276150 /// MSPI0406S00276151 MSPI0406S00276150 0.064391112 -1.858883769 204619_s_at /// 221731_x_at /// 204620_s_at /// 215646_s_at /// 211571_s_at 204619_s_at 0.044618355 1.834842214
NM_001164097 VCAN MSPI0406S00276150 /// MSPI0406S00276151 MSPI0406S00276150 0.064391112 -1.858883769 204619_s_at /// 221731_x_at /// 204620_s_at /// 215646_s_at /// 211571_s_at 204619_s_at 0.044618355 1.834842214
NM_001164098 VCAN MSPI0406S00276150 /// MSPI0406S00276151 MSPI0406S00276150 0.064391112 -1.858883769 204619_s_at /// 221731_x_at /// 204620_s_at /// 215646_s_at /// 211571_s_at 204619_s_at 0.044618355 1.834842214
NM_004385 VCAN MSPI0406S00276150 /// MSPI0406S00276151 MSPI0406S00276150 0.064391112 -1.858883769 204619_s_at /// 221731_x_at /// 204620_s_at /// 215646_s_at /// 211571_s_at 204619_s_at 0.044618355 1.834842214
NM_006908 RAC1 MSPI0406S00358656 MSPI0406S00358656 0.078855666 -1.619037529 208641_s_at /// 208640_at 208641_s_at 0.06019801 1.418892686
NM_018890 RAC1 MSPI0406S00358656 MSPI0406S00358656 0.078855666 -1.619037529 208641_s_at /// 208640_at 208641_s_at 0.06019801 1.418892686
NM_003898 SYNJ2 MSPI0406S00345101 /// MSPI0406S00345102 MSPI0406S00345101 0.031665646 -1.881074912 210612_s_at /// 212828_at /// 216180_s_at 210612_s_at /// 212828_at 0.000282300121514606 /// 0.00125220925884645 2.71930429845912 /// 2.16429923886073
NM_001007468 SMARCB1 MSPI0406S00960122 /// MSPI0406S00960120 /// MSPI0406S00960121 MSPI0406S00960122 /// MSPI0406S00960120 0.023433448785605 /// 0.0474283578593965 -2.18944901700234 /// -1.88287630506712 212167_s_at 212167_s_at 0.062149561 1.289059522
NM_003073 SMARCB1 MSPI0406S00960122 /// MSPI0406S00960120 /// MSPI0406S00960121 MSPI0406S00960122 /// MSPI0406S00960120 0.023433448785605 /// 0.0474283578593965 -2.18944901700234 /// -1.88287630506712 212167_s_at 212167_s_at 0.062149561 1.289059522
NM_020401 NUP107 MSPI0406S00618566 MSPI0406S00618566 0.011603472 -3.231416683 218768_at 218768_at 0.084027074 1.212262749
NM_001135811 FAM60A /// FLJ13224 MSPI0406S00607104 /// MSPI0406S00607105 MSPI0406S00607104 0.065297402 -3.536544582 220147_s_at 220147_s_at 0.009204556 1.512065764
NM_001135812 FAM60A /// FLJ13224 MSPI0406S00607104 /// MSPI0406S00607105 MSPI0406S00607104 0.065297402 -3.536544582 220147_s_at 220147_s_at 0.009204556 1.512065764
NM_021238 FAM60A /// FLJ13224 MSPI0406S00607104 /// MSPI0406S00607105 MSPI0406S00607104 0.065297402 -3.536544582 220147_s_at 220147_s_at 0.009204556 1.512065764