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ALL Methylation Supplementary Table 5b-13

List of Refseq genes with upregulated FDR<0.1 and hypermethylated FDR<0.1 in nonTCF3_B

Refseq Genes Possible HELP ProbeSet Useful HELP ProbeSet HELP ProbeSet FDR HELP ProbeSet FC Possible Affy ProbeSet Useful Affy ProbeSet Affy ProbeSet FDR Affy ProbeSet FC
NM_001115156 GDI2 MSPI0406S00500320 /// MSPI0406S00500319 MSPI0406S00500320 0.068093266 -1.523634872 200008_s_at /// 200009_at 200008_s_at 0.033958973 1.464218134
NM_001494 GDI2 MSPI0406S00500320 /// MSPI0406S00500319 MSPI0406S00500320 0.068093266 -1.523634872 200008_s_at /// 200009_at 200008_s_at 0.033958973 1.464218134
NM_000391 TPP1 MSPI0406S00553109 /// MSPI0406S00553107 /// MSPI0406S00553108 /// MSPI0406S00553106 MSPI0406S00553109 /// MSPI0406S00553107 /// MSPI0406S00553108 7.20489128154014e-05 /// 0.00025148426989698 /// 0.0081121785806261 -1.82663400693652 /// -1.81592987037834 /// -1.36610518257969 200742_s_at /// 214196_s_at /// 200743_s_at 200742_s_at /// 214196_s_at /// 200743_s_at 0.000102739163815526 /// 0.000172325686574265 /// 0.0158288116940331 1.76959109180257 /// 2.5398264503802 /// 2.5398264503802
NM_003144 SSR1 MSPI0406S00306895 /// MSPI0406S00306896 MSPI0406S00306895 0.014831856 -2.617772011 200889_s_at /// 200890_s_at /// 201894_s_at /// 200891_s_at 200889_s_at /// 200890_s_at 0.00937284807152891 /// 0.0619061780849233 1.66690111179119 /// 1.49288057096189
NM_003559 PIP4K2B MSPI0406S00804573 /// MSPI0406S00804572 MSPI0406S00804573 0.002371358 -3.673535504 201081_s_at /// 201080_at 201081_s_at 0.038676662 1.957930966
NM_001024211 S100A13 /// S100A1 MSPI0406S00056132 /// MSPI0406S00056131 /// MSPI0406S00056135 /// MSPI0406S00056134 MSPI0406S00056132 0.051984954 -1.957363681 213481_at /// 202598_at 213481_at /// 202598_at 0.0225495454396176 /// 0.0330920509795268 1.8146348697348 /// 1.58940441106926
NM_001024212 S100A13 /// S100A1 MSPI0406S00056132 /// MSPI0406S00056131 /// MSPI0406S00056135 /// MSPI0406S00056134 MSPI0406S00056132 0.051984954 -1.957363681 213481_at /// 202598_at 213481_at /// 202598_at 0.0225495454396176 /// 0.0330920509795268 1.8146348697348 /// 1.58940441106926
NM_001024213 S100A13 /// S100A1 MSPI0406S00056132 /// MSPI0406S00056131 /// MSPI0406S00056135 /// MSPI0406S00056134 MSPI0406S00056132 0.051984954 -1.957363681 213481_at /// 202598_at 213481_at /// 202598_at 0.0225495454396176 /// 0.0330920509795268 1.8146348697348 /// 1.58940441106926
NM_005979 S100A13 /// S100A1 MSPI0406S00056132 /// MSPI0406S00056131 /// MSPI0406S00056142 /// MSPI0406S00056135 /// MSPI0406S00056134 MSPI0406S00056132 0.051984954 -1.957363681 213481_at /// 202598_at 213481_at /// 202598_at 0.0225495454396176 /// 0.0330920509795268 1.8146348697348 /// 1.58940441106926
NM_000262 NAGA /// FAM109B /// C22orf32 MSPI0406S00973719 /// MSPI0406S00973712 MSPI0406S00973719 0.000766554 -2.722358744 202943_s_at /// 202944_at 202943_s_at 0.07945365 1.318693031
NM_012306 FAIM2 MSPI0406S00611496 MSPI0406S00611496 0.064085748 -1.562596316 203618_at 203618_at 0.040881757 1.487201565
NM_014473 DIMT1L MSPI0406S00270772 /// MSPI0406S00270771 MSPI0406S00270772 0.039176977 -1.200419016 210801_at /// 217106_x_at /// 204405_x_at /// 210802_s_at 210801_at 0.08036455 1.546215097
NM_002445 MSR1 MSPI0406S00416270 MSPI0406S00416270 0.001278064 -1.689779443 214770_at /// 208422_at /// 208423_s_at 214770_at 0.017381079 2.194422992
NM_138715 MSR1 MSPI0406S00416270 MSPI0406S00416270 0.001278064 -1.689779443 214770_at /// 208422_at /// 208423_s_at 214770_at 0.017381079 2.194422992
NM_138716 MSR1 MSPI0406S00416270 MSPI0406S00416270 0.001278064 -1.689779443 214770_at /// 208422_at /// 208423_s_at 214770_at 0.017381079 2.194422992
NM_003524 HIST1H4G /// HIST1H3F /// HIST1H2BH MSPI0406S00313306 /// MSPI0406S00313307 /// MSPI0406S00313314 /// MSPI0406S00313313 /// MSPI0406S00313312 MSPI0406S00313306 0.082425492 -1.222905444 208546_x_at 208546_x_at 0.005890015 2.249957839
NM_002079 GOT1 MSPI0406S00531423 /// MSPI0406S00531424 MSPI0406S00531423 0.054950904 -1.59990775 208813_at 208813_at 0.003893629 2.4955599
NM_001018053 YOD1 /// PFKFB2 MSPI0406S00072070 /// MSPI0406S00072067 /// MSPI0406S00072068 /// MSPI0406S00072066 MSPI0406S00072070 0.045538217 -1.956510647 209992_at 209992_at 0.061205365 1.666404739
NM_006212 YOD1 /// PFKFB2 MSPI0406S00072070 /// MSPI0406S00072067 /// MSPI0406S00072068 /// MSPI0406S00072066 MSPI0406S00072070 0.045538217 -1.956510647 209992_at 209992_at 0.061205365 1.666404739
NM_001129888 CYHR1 /// KIFC2 MSPI0406S00451456 /// MSPI0406S00451458 MSPI0406S00451456 0.063004842 -1.752765556 213072_at /// 213681_at 213072_at 0.052301061 1.652378004
NM_032687 CYHR1 /// KIFC2 MSPI0406S00451456 /// MSPI0406S00451458 MSPI0406S00451456 0.063004842 -1.752765556 213072_at /// 213681_at 213072_at 0.052301061 1.652378004
NM_138496 CYHR1 /// KIFC2 MSPI0406S00451456 /// MSPI0406S00451458 MSPI0406S00451456 0.063004842 -1.752765556 213072_at /// 213681_at 213072_at 0.052301061 1.652378004
NM_007220 CA5B MSPI0406S00988469 MSPI0406S00988469 0.083987442 -1.368825225 214082_at 214082_at 0.083164794 1.642882517
NM_000662 NAT1 MSPI0406S00416791 /// MSPI0406S00416792 MSPI0406S00416791 0.012481971 -2.364991708 214440_at 214440_at 0.07260628 1.306302329
NM_001160170 NAT1 MSPI0406S00416791 /// MSPI0406S00416792 MSPI0406S00416791 0.012481971 -2.364991708 214440_at 214440_at 0.07260628 1.306302329
NM_001160171 NAT1 MSPI0406S00416791 /// MSPI0406S00416792 MSPI0406S00416791 0.012481971 -2.364991708 214440_at 214440_at 0.07260628 1.306302329
NM_001160172 NAT1 MSPI0406S00416791 /// MSPI0406S00416792 MSPI0406S00416791 0.012481971 -2.364991708 214440_at 214440_at 0.07260628 1.306302329
NM_001160173 NAT1 MSPI0406S00416791 /// MSPI0406S00416792 MSPI0406S00416791 0.012481971 -2.364991708 214440_at 214440_at 0.07260628 1.306302329
NM_001160175 NAT1 MSPI0406S00416791 /// MSPI0406S00416792 MSPI0406S00416791 0.012481971 -2.364991708 214440_at 214440_at 0.07260628 1.306302329
NM_001160176 NAT1 MSPI0406S00416791 /// MSPI0406S00416792 MSPI0406S00416791 0.012481971 -2.364991708 214440_at 214440_at 0.07260628 1.306302329
NM_016176 SDF4 /// B3GALT6 MSPI0406S00000761 /// MSPI0406S00000762 /// MSPI0406S00000758 /// MSPI0406S00000757 /// MSPI0406S00000756 /// MSPI0406S00000759 MSPI0406S00000761 /// MSPI0406S00000762 1.67917708315196e-06 /// 0.0232533794926515 -4.48573505487155 /// -2.88281280898098 221972_s_at /// 217855_x_at 221972_s_at 0.087354454 1.532520786
NM_016547 SDF4 /// B3GALT6 MSPI0406S00000761 /// MSPI0406S00000762 /// MSPI0406S00000758 /// MSPI0406S00000757 /// MSPI0406S00000756 /// MSPI0406S00000759 MSPI0406S00000761 /// MSPI0406S00000762 1.67917708315196e-06 /// 0.0232533794926515 -4.48573505487155 /// -2.88281280898098 221972_s_at /// 217855_x_at 221972_s_at 0.087354454 1.532520786
NM_016215 EGFL7 MSPI0406S00494994 /// MSPI0406S00494992 /// MSPI0406S00494991 /// MSPI0406S00494995 MSPI0406S00494994 0.045875234 -1.809618394 218825_at 218825_at 4.82E-05 5.676789431
NM_201446 EGFL7 MSPI0406S00494994 /// MSPI0406S00494992 /// MSPI0406S00494991 /// MSPI0406S00494995 MSPI0406S00494994 0.045875234 -1.809618394 218825_at 218825_at 4.82E-05 5.676789431
NM_022047 DEF6 MSPI0406S00318883 /// MSPI0406S00318884 MSPI0406S00318883 2.32E-06 -3.126051092 221293_s_at 221293_s_at 0.00561003 1.725114945
NM_133447 C10orf116 /// AGAP11 MSPI0406S00527449 /// MSPI0406S00527448 /// MSPI0406S00527443 /// MSPI0406S00527444 MSPI0406S00527449 0.078505621 -1.663605299 221850_x_at 221850_x_at 0.024944945 1.390109531
NM_203390 RBM12B /// C8orf39 MSPI0406S00435798 /// MSPI0406S00435797 MSPI0406S00435798 0.055288861 -1.243368427 51228_at /// 51226_at 51228_at /// 51226_at 0.0792342446656599 /// 0.0795257092863633 1.5529829116701 /// 1.52006395153253