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ALL Methylation Supplementary Table 4-9

List of highly correlated Refseq genes with downregulated FDR<0.05 and hypermethylated FDR<0.05 in ERGr_B

RefSeq Genes Annotation Cytoband Max Pearson Corr Estimate P Max Pearson Corr Max Pearson Corr Affy Probe GEP FC GEP FDR GEP Common Rank Max Pearson Corr HELP Probe MET Delta MET FDR
NM_007161 LST1 leukocyte specific transcript 1 chr6p21.3 0.693576754 0 214181_x_at 5.637480071 2.54E-05 127 / 12428 MSPI0406S00315957 1.611093709 0.003077718
NM_002341 LTB lymphotoxin beta (TNF superfamily, member 3) chr6p21.3 0.62798234 2.66E-15 207339_s_at 3.588238357 0.006020225 538 / 12428 MSPI0406S00315958 1.746681817 0.000509001
NM_014957 DENND3 DENN/MADD domain containing 3 chr8q24.3 0.574958436 1.56E-12 212975_at 3.903874884 2.80E-07 48 / 12428 MSPI0406S00447241 1.091460633 0.000173163
NM_000147 FUCA1 fucosidase, alpha-L- 1, tissue chr1p34 0.567672754 3.41E-12 202838_at 1.996573731 0.006664897 555 / 12428 MSPI0406S00020954 1.858307765 0.005175721
NM_024943 TMEM156 transmembrane protein 156 chr4p14 0.555138815 1.26E-11 220169_at 2.411572646 0.002249952 406 / 12428 MSPI0406S00228312 0.67183938 0.035628692
NM_016562 TLR7 toll-like receptor 7 chrXp22.3 0.515079279 5.80E-10 220146_at 2.19136931 0.026602652 972 / 12428 MSPI0406S00987783 1.615808444 0.009992815
NM_001778 CD48 CD48 molecule chr1q21.3-q22 0.472598937 2.02E-08 204118_at 1.643659067 0.037948342 1108 / 12428 MSPI0406S00060116 1.581176175 1.68E-05
NM_001135911 PIK3IP1 phosphoinositide-3-kinase interacting protein 1 chr22q12.2 0.454845192 7.78E-08 221756_at 2.250243663 0.001488781 367 / 12428 MSPI0406S00965155 1.885655014 0.000224932
NM_015150 RFTN1 raftlin, lipid raft linker 1 chr3p25.1-p24.3 0.443752826 1.74E-07 212646_at 1.768110808 0.001145853 351 / 12428 MSPI0406S00168555 1.969368433 3.85E-05
NM_001040138 CKLF chemokine-like factor chr16q21 0.441215099 2.08E-07 219161_s_at 2.317682373 0.000124436 183 / 12428 MSPI0406S00763943 0.74427696 0.000513054
NM_006000 TUBA4A tubulin, alpha 4a chr2q35 0.419159503 9.35E-07 212242_at 2.029481046 0.007943509 582 / 12428 MSPI0406S00150109 1.773132167 4.17E-05
NM_001838 CCR7 chemokine (C-C motif) receptor 7 chr17q12-q21.2 0.419122158 9.38E-07 206337_at 1.851840441 0.00374099 467 / 12428 MSPI0406S00806128 1.10898401 0.041355773
NM_000211 ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) chr21q22.3 0.41795587 1.01E-06 202803_s_at 2.364776267 0.001005903 336 / 12428 MSPI0406S00952182 1.468178142 0.001341551
NM_001025160 CD97 CD97 molecule chr19p13 0.407183077 2.03E-06 202910_s_at 2.715997595 9.53E-05 173 / 12428 MSPI0406S00875954 0.806987494 0.000720602
NM_000565 IL6R interleukin 6 receptor chr1q21 0.389533983 6.00E-06 205945_at 2.284093278 0.030623005 1033 / 12428 MSPI0406S00056802 0.862976395 0.00174112
NM_001262 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) chr1p32 0.372491109 1.61E-05 211792_s_at 2.229773389 0.000375752 259 / 12428 MSPI0406S00036791 1.381250799 2.70E-15
NM_013233 STK39 serine threonine kinase 39 (STE20/SPS1 homolog, yeast) chr2q24.3 0.362098808 2.87E-05 202786_at 2.637138148 4.09E-05 143 / 12428 MSPI0406S00138625 0.600773113 0.04492976
NM_004425 ECM1 extracellular matrix protein 1 chr1q21 0.332704831 0.000132488 209365_s_at 4.203180987 3.16E-05 137 / 12428 MSPI0406S00054603 1.076373855 0.01177312
NM_001623 AIF1 allograft inflammatory factor 1 chr6p21.3 0.330612681 0.00014687 213095_x_at 6.461816145 8.16E-07 69 / 12428 MSPI0406S00315983 1.356433384 0.006020729
NM_001142523 IRAK3 interleukin-1 receptor-associated kinase 3 chr12q14.3 0.322087208 0.000221835 213817_at 4.821936704 7.65E-07 64 / 12428 MSPI0406S00618117 1.151616915 0.023598487
NM_001236 CBR3 carbonyl reductase 3 chr21q22.2 0.312132696 0.000353642 205379_at 2.862540704 0.000915662 323 / 12428 MSPI0406S00945832 0.630689862 0.021823397
NM_002397 MEF2C myocyte enhancer factor 2C chr5q14 0.299958086 0.000612136 209200_at 4.959711021 2.17E-08 31 / 12428 MSPI0406S00276770 1.499257574 0.004674606
NM_014350 TNFAIP8 tumor necrosis factor, alpha-induced protein 8 chr5q23.1 0.29626209 0.000719738 210260_s_at 2.337637152 6.41E-05 160 / 12428 MSPI0406S00280910 1.93417556 4.16E-05
NM_001386 DPYSL2 dihydropyrimidinase-like 2 chr8p22-p21 0.291619901 0.000879421 200762_at 3.407815013 1.83E-08 29 / 12428 MSPI0406S00420310 0.230403263 0.020968599
NM_007261 CD300A CD300a molecule chr17q25.1 0.268655672 0.002258033 209933_s_at 1.75836862 0.022433141 881 / 12428 MSPI0406S00824836 0.437682372 0.040742351
NM_001004196 CD200 CD200 molecule chr3q12-q13 0.268480102 0.002273681 209583_s_at 1.764198542 0.036897188 1091 / 12428 MSPI0406S00190765 0.928729557 0.019747833
NM_006135 CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 chr1p13.2 0.25346106 0.004037401 208374_s_at 1.256592446 0.043313054 1223 / 12428 MSPI0406S00050294 0.833683413 0.030488623
NM_001134479 LRRC8D leucine rich repeat containing 8 family, member D chr1p22.2 0.252246471 0.00422331 218684_at 1.562453704 0.004112236 479 / 12428 MSPI0406S00045471 1.485567711 0.005549698
NM_001042537 SLC9A6 solute carrier family 9 (sodium/hydrogen exchanger), member 6 chrXq26.3 0.243771693 0.005748416 203909_at 1.69256008 0.000111426 178 / 12428 MSPI0406S01015047 0.78261867 0.001645776
NM_000788 DCK deoxycytidine kinase chr4q13.3-q21.1 0.233903332 0.008127793 203302_at 1.637603416 0.002090915 397 / 12428 MSPI0406S00234064 1.070960635 0.046684652
NM_022149 MAGEF1 melanoma antigen family F, 1 chr3q13 0.232046726 0.008662071 218176_at 4.397872277 1.02E-06 74 / 12428 MSPI0406S00208688 0.770236114 0.030025084
NM_002795 PSMB3 proteasome (prosome, macropain) subunit, beta type, 3 chr17q12 0.230260456 0.009205139 201400_at 1.335735451 0.049722433 1313 / 12428 MSPI0406S00804531 0.378656827 0.005731118
NM_006471 MYL12A /// MYL12B myosin, light chain 12A, regulatory, non-sarcomeric /// myosin, light chain 12B, regulatory chr18p11.31 0.21169035 0.016885823 201319_at 1.309948201 0.026930141 976 / 12428 MSPI0406S00837748 1.085971029 0.028088654
NM_005574 LMO2 LIM domain only 2 (rhombotin-like 1) chr11p13 0.20168753 0.022975019 204249_s_at 1.957691199 0.004469174 489 / 12428 MSPI0406S00559727 0.771118961 0.006313069
NM_001196 BID BH3 interacting domain death agonist chr22q11.1 0.199609462 0.024453033 211725_s_at 1.494129966 0.007017357 567 / 12428 MSPI0406S00954989 0.540191139 0.00309811
NM_012117 CBX5 chromobox homolog 5 (HP1 alpha homolog, Drosophila) chr12q13.13 0.188204625 0.034093699 212126_at 1.467589225 0.039998074 1142 / 12428 MSPI0406S00614584 0.463459347 0.006719039
NM_002162 ICAM3 intercellular adhesion molecule 3 chr19p13.3-p13.2 0.18227592 0.040261988 204949_at 3.316858451 4.57E-08 39 / 12428 MSPI0406S00871445 1.155548658 0.013033578
NM_006754 SYPL1 synaptophysin-like 1 chr7q22.3 0.181034403 0.041665632 201260_s_at 2.200945758 1.25E-07 46 / 12428 MSPI0406S00391172 0.626806021 0.019609881