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ALL Methylation Supplementary Table 4-3

List of highly correlated Refseq genes with downregulated FDR<0.05 and hypermethylated FDR<0.05 in ETV6_B

RefSeq Genes Annotation Cytoband Max Pearson Corr Estimate P Max Pearson Corr Max Pearson Corr Affy Probe GEP FC GEP FDR GEP Common Rank Max Pearson Corr HELP Probe MET Delta MET FDR
NM_000318 PXMP3 peroxisomal membrane protein 3, 35kDa chr8q21.1 0.544006828 3.84E-11 210296_s_at 1.801329886 2.49E-06 235 / 12428 MSPI0406S00433478 0.456589146 0.036877926
NM_002163 IRF8 interferon regulatory factor 8 chr16q24.1 0.498756905 2.41E-09 204057_at 1.681500159 0.003174903 934 / 12428 MSPI0406S00775844 0.805693589 0.035113419
NM_002727 SRGN serglycin chr10q22.1 0.471475035 2.21E-08 201858_s_at 5.893934627 5.32E-09 104 / 12428 MSPI0406S00519754 1.139979349 6.40E-05
NM_020404 CD248 CD248 molecule, endosialin chr11q13 0.457175711 6.55E-08 219025_at 1.409517063 0.001754922 831 / 12428 MSPI0406S00571642 0.638212915 5.97E-05
NM_005567 LGALS3BP lectin, galactoside-binding, soluble, 3 binding protein chr17q25 0.446470156 1.43E-07 200923_at 1.808747704 0.004506594 1031 / 12428 MSPI0406S00829919 0.378859186 0.02286589
NM_021643 TRIB2 tribbles homolog 2 (Drosophila) chr2p24.3 0.428009249 5.18E-07 202479_s_at 1.899120523 0.014792511 1498 / 12428 MSPI0406S00094680 0.598521085 0.002368446
NM_004479 FUT7 fucosyltransferase 7 (alpha (1,3) fucosyltransferase) chr9q34.3 0.40716325 2.03E-06 210506_at 1.97158783 0.005184059 1078 / 12428 MSPI0406S00495548 0.423661841 0.000246239
NM_016199 LSM7 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) chr19p13.3 0.388102272 6.53E-06 204559_s_at 1.412322306 0.000918754 717 / 12428 MSPI0406S00861737 0.848189401 0.002793575
NM_198253 TERT telomerase reverse transcriptase chr5p15.33 0.330457163 0.000147995 207199_at 1.91956966 0.00065461 668 / 12428 MSPI0406S00257196 0.93724347 0.00755857
NM_001800 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) chr19p13 0.328821665 0.000160323 210240_s_at 1.959732375 2.48E-07 181 / 12428 MSPI0406S00871760 0.513363705 5.45E-07
NM_002802 PSMC1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 chr14q32.11 0.298536127 0.00065165 204219_s_at 1.199295579 0.028051367 1828 / 12428 MSPI0406S00686827 0.67564485 0.001198429
NM_003650 CST7 cystatin F (leukocystatin) chr20p11.21 0.284450975 0.001190572 210140_at 1.733777603 0.018092417 1566 / 12428 MSPI0406S00918000 0.883296384 0.000569374
NM_004555 NFATC3 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 chr16q22.2 0.270177465 0.002126426 210555_s_at 1.433083662 0.001192006 757 / 12428 MSPI0406S00765336 0.642088396 0.029001525
NM_005951 MT1H metallothionein 1H chr16q13 0.266569791 0.002450403 206461_x_at 1.906467242 0.005182374 1076 / 12428 MSPI0406S00760991 0.559801441 4.02E-05
NM_003681 PDXK pyridoxal (pyridoxine, vitamin B6) kinase chr21q22.3 0.247045606 0.00510909 202671_s_at 2.142988032 0.007781868 1222 / 12428 MSPI0406S00950695 0.451788217 0.010855473
NM_006621 AHCYL1 adenosylhomocysteinase-like 1 chr1p13.2 0.244724588 0.005555358 200850_s_at 1.245859517 0.001788051 833 / 12428 MSPI0406S00049370 0.419987863 0.046581222
NM_001002017 HCFC1R1 host cell factor C1 regulator 1 (XPO1 dependent) chr16p13.3 0.23907555 0.00678988 45714_at 1.454950645 0.018119232 1567 / 12428 MSPI0406S00737476 0.524049216 0.013304089
NM_001136023 NFE2 nuclear factor (erythroid-derived 2), 45kDa chr12q13 0.225586964 0.010770448 209930_s_at 1.814121742 0.038373409 2034 / 12428 MSPI0406S00614592 0.531485676 0.047968266
NM_002339 LSP1 lymphocyte-specific protein 1 chr11p15.5 0.22419706 0.01127899 203523_at 3.506476161 1.71E-08 125 / 12428 MSPI0406S00550400 0.541980767 0.001731991
NM_001995 ACSL1 acyl-CoA synthetase long-chain family member 1 chr4q34-q35 0.218325757 0.013666818 207275_s_at 1.837040774 9.02E-05 451 / 12428 MSPI0406S00253367 0.778664105 0.036094509
NM_003121 SPIB Spi-B transcription factor (Spi-1/PU.1 related) chr19q13.3-q13.4 0.205453614 0.020491225 205861_at 2.04517551 0.007251044 1195 / 12428 MSPI0406S00902844 0.435771829 0.04782864
NM_006420 ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) chr20q13.13 0.200792227 0.023602125 218098_at 1.206971242 0.019696024 1619 / 12428 MSPI0406S00929199 0.164309747 0.040018948
NM_023008 KRI1 KRI1 homolog (S. cerevisiae) chr19p13.2 0.187679705 0.034605535 218798_at 1.497080521 0.029636501 1869 / 12428 MSPI0406S00871760 0.513363705 5.45E-07
NM_001031719 DHRS12 dehydrogenase/reductase (SDR family) member 12 chr13q14.3 0.182889625 0.039582906 204800_s_at 1.564096154 2.36E-05 359 / 12428 MSPI0406S00653658 0.174861178 0.00981097
NM_002965 S100A9 S100 calcium binding protein A9 chr1q21 0.180692439 0.042059364 203535_at 2.546410096 0.009269429 1279 / 12428 MSPI0406S00055975 1.02938476 0.003814135
NM_016293 BIN2 bridging integrator 2 chr12q13 0.175703856 0.048165673 219191_s_at 1.605482376 0.049248183 2201 / 12428 MSPI0406S00612485 0.598995105 0.000836627
NM_000895 LTA4H leukotriene A4 hydrolase chr12q22 0.17523244 0.048778951 208771_s_at 1.852069275 9.52E-06 304 / 12428 MSPI0406S00622971 0.591972075 0.044416766