ALL Methylation Supplementary Table 4-14
List of highly correlated Refseq genes with upregulated FDR<0.05 and hypomethylated FDR<0.05 in TCF3_B
RefSeq |
Genes |
Annotation |
Cytoband |
Max Pearson Corr |
Estimate P Max Pearson Corr |
Max Pearson Corr Affy Probe |
GEP FC |
GEP FDR |
GEP Common Rank |
Max Pearson Corr HELP Probe |
MET Delta |
MET FDR |
NM_003037 |
SLAMF1 |
signaling lymphocytic activation molecule family member 1 |
chr1q22-q23 |
0.515135183 |
5.77E-10 |
206181_at |
-5.181021235 |
2.22E-16 |
18 / 12428 |
MSPI0406S00060099 |
-2.478337181 |
1.14E-13 |
NM_005245 |
FAT1 |
FAT tumor suppressor homolog 1 (Drosophila) |
chr4q35 |
0.490367057 |
4.86E-09 |
201579_at |
-13.30041003 |
1.09E-13 |
20 / 12428 |
MSPI0406S00254314 |
-1.447307052 |
0.028029308 |
NM_001888 |
CRYM |
crystallin, mu |
chr16p13.11-p12.3 |
0.444883265 |
1.60E-07 |
205489_at |
-4.430350646 |
3.93E-11 |
27 / 12428 |
MSPI0406S00748727 |
-3.34935375 |
6.00E-22 |
NM_004997 |
MYBPH |
myosin binding protein H |
chr1q32.1 |
0.43555387 |
3.09E-07 |
206304_at |
-3.129469987 |
1.03E-06 |
72 / 12428 |
MSPI0406S00069855 |
-2.941275947 |
4.41E-13 |
NM_005737 |
ARL4C |
ADP-ribosylation factor-like 4C |
chr2q37.1 |
0.329768535 |
0.000153074 |
202207_at |
-11.72798377 |
3.02E-23 |
5 / 12428 |
MSPI0406S00155756 |
-1.384510614 |
0.031665646 |
NM_001628 |
AKR1B1 |
aldo-keto reductase family 1, member B1 (aldose reductase) |
chr7q35 |
0.325152875 |
0.000191529 |
201272_at |
-2.471363657 |
2.68E-06 |
87 / 12428 |
MSPI0406S00396812 |
-1.72329845 |
1.51E-07 |
NM_015462 |
NOL11 |
nucleolar protein 11 |
chr17q24.2 |
0.303241005 |
0.000529177 |
221970_s_at |
-1.397334206 |
0.008863925 |
716 / 12428 |
MSPI0406S00821660 |
-2.19969716 |
3.35E-07 |
NM_015045 |
WAPAL |
wings apart-like homolog (Drosophila) |
chr10q23.2 |
0.279461484 |
0.00146324 |
212267_at |
-2.452403751 |
0.000155081 |
190 / 12428 |
MSPI0406S00527148 |
-2.711520984 |
1.96E-14 |
NM_001014987 |
LAT /// SPNS1 |
linker for activation of T cells /// spinster homolog 1 (Drosophila) |
chr16p11.2 |
0.259632056 |
0.003201501 |
209881_s_at |
-2.562799392 |
0.000972057 |
311 / 12428 |
MSPI0406S00753214 |
-1.275600046 |
0.000436265 |
NM_016087 |
WNT16 |
wingless-type MMTV integration site family, member 16 |
chr7q31 |
0.247512468 |
0.005023293 |
221113_s_at |
-11.71279188 |
3.30E-18 |
10 / 12428 |
MSPI0406S00393149 |
-0.432687589 |
0.015860519 |
NM_001033028 |
CYFIP1 |
cytoplasmic FMR1 interacting protein 1 |
chr15q11 |
0.231369876 |
0.008864427 |
208923_at |
-3.371148774 |
1.51E-08 |
44 / 12428 |
MSPI0406S00699417 |
-0.939782235 |
0.00120719 |
NM_004040 |
RHOB |
ras homolog gene family, member B |
chr2p24 |
0.211949174 |
0.016748911 |
212099_at |
-2.796562496 |
0.005830312 |
608 / 12428 |
MSPI0406S00096450 |
-0.882580654 |
0.032016968 |
NM_002168 |
IDH2 |
isocitrate dehydrogenase 2 (NADP+), mitochondrial |
chr15q26.1 |
0.207606403 |
0.01917813 |
210046_s_at |
-1.565267297 |
0.024559042 |
1152 / 12428 |
MSPI0406S00727463 |
-1.159387224 |
0.010951228 |