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ALL Methylation Supplementary Table 4-13

List of highly correlated Refseq genes with downregulated FDR<0.05 and hypermethylated FDR<0.05 in TCF3_B

RefSeq Genes Annotation Cytoband Max Pearson Corr Estimate P Max Pearson Corr Max Pearson Corr Affy Probe GEP FC GEP FDR GEP Common Rank Max Pearson Corr HELP Probe MET Delta MET FDR
NM_003877 SOCS2 suppressor of cytokine signaling 2 chr12q 0.654680223 0 203372_s_at 18.01948423 1.14E-18 9 / 12428 MSPI0406S00622030 1.465604241 4.00E-09
NM_002341 LTB lymphotoxin beta (TNF superfamily, member 3) chr6p21.3 0.62798234 2.66E-15 207339_s_at 5.899506834 0.000450856 255 / 12428 MSPI0406S00315958 1.463764418 0.04091649
NM_002201 ISG20 interferon stimulated exonuclease gene 20kDa chr15q26 0.564505537 4.77E-12 33304_at 1.836095459 0.043130698 1573 / 12428 MSPI0406S00726380 1.987084127 2.63E-05
NM_024943 TMEM156 transmembrane protein 156 chr4p14 0.555138815 1.26E-11 220169_at 3.358916063 0.000121104 182 / 12428 MSPI0406S00228312 1.354458158 2.32E-06
NM_002039 GAB1 GRB2-associated binding protein 1 chr4q31.21 0.523017676 2.82E-10 207112_s_at 4.774125884 1.68E-08 46 / 12428 MSPI0406S00245299 2.80318425 0.000857472
NM_003263 TLR1 toll-like receptor 1 chr4p14 0.49194232 4.26E-09 210176_at 1.952426385 0.001315611 345 / 12428 MSPI0406S00228209 2.490147298 1.12E-06
NM_001160 APAF1 apoptotic peptidase activating factor 1 chr12q23 0.408351478 1.88E-06 204859_s_at 1.69506196 0.0036168 498 / 12428 MSPI0406S00623620 1.425590642 0.016701433
NM_001025160 CD97 CD97 molecule chr19p13 0.407183077 2.03E-06 202910_s_at 2.201963436 0.016761056 952 / 12428 MSPI0406S00875954 0.871491131 0.002032061
NM_000565 IL6R interleukin 6 receptor chr1q21 0.389533983 6.00E-06 205945_at 3.271312312 0.003820542 516 / 12428 MSPI0406S00056802 0.789672935 0.03727644
NM_004840 ARHGEF6 Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 chrXq26.3 0.331307813 0.000141938 209539_at 1.820052937 0.001391959 352 / 12428 MSPI0406S01015291 2.024243854 1.63E-07
NM_002287 LAIR1 leukocyte-associated immunoglobulin-like receptor 1 chr19q13.4 0.32969873 0.000153598 210644_s_at 3.306732548 1.23E-07 58 / 12428 MSPI0406S00906287 1.473894542 0.000163812
NM_000626 CD79B CD79b molecule, immunoglobulin-associated beta chr17q23 0.300994241 0.000584744 205297_s_at 1.944612186 0.008829478 714 / 12428 MSPI0406S00819368 2.646219402 2.85E-06
NM_005775 SORBS3 sorbin and SH3 domain containing 3 chr8p21.3 0.299866438 0.000614615 207788_s_at 3.013610078 0.003069943 463 / 12428 MSPI0406S00418578 1.073907369 0.000934577
NM_005730 CTDSP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 chr12q13-q15 0.282941293 0.001267729 203445_s_at 1.37890526 0.00993144 765 / 12428 MSPI0406S00616618 1.227843953 0.026602578
NM_015147 CEP68 centrosomal protein 68kDa chr2p14 0.238177744 0.007007057 207971_s_at 1.657319883 0.012129843 819 / 12428 MSPI0406S00110875 0.622804937 2.56E-06
NM_014877 HELZ helicase with zinc finger chr17q24.2 0.220031041 0.012931575 203674_at 1.285346302 0.012543416 827 / 12428 MSPI0406S00821290 1.476787666 0.021835564
NM_025113 C13orf18 chromosome 13 open reading frame 18 chr13q14.13 0.200310605 0.023945501 44790_s_at 8.603764018 2.57E-07 61 / 12428 MSPI0406S00652217 0.614313914 0.003903788
NM_006237 POU4F1 POU class 4 homeobox 1 chr13q31.1 0.192742673 0.029929443 206940_s_at 5.078213468 0.001255694 335 / 12428 MSPI0406S00657197 0.483691012 0.015860519