ALL Methylation Supplementary Table 4-11
List of highly correlated Refseq genes with downregulated FDR<0.05 and hypermethylated FDR<0.05 in BCRABL1
RefSeq |
Genes |
Annotation |
Cytoband |
Max Pearson Corr |
Estimate P Max Pearson Corr |
Max Pearson Corr Affy Probe |
GEP FC |
GEP FDR |
GEP Common Rank |
Max Pearson Corr HELP Probe |
MET Delta |
MET FDR |
NM_006563 |
KLF1 |
Kruppel-like factor 1 (erythroid) |
chr19p13.13-p13.12 |
0.512870803 |
7.06E-10 |
210504_at |
1.728092362 |
0.018030265 |
615 / 12428 |
MSPI0406S00874250 |
0.559100216 |
0.018536168 |
NM_003119 |
SPG7 |
spastic paraplegia 7 (pure and complicated autosomal recessive) |
chr16q24.3 |
0.379444925 |
1.08E-05 |
202104_s_at |
1.399000224 |
0.018600431 |
629 / 12428 |
MSPI0406S00780013 |
0.367227686 |
0.000559655 |
NM_024898 |
DENND1C |
DENN/MADD domain containing 1C |
chr19p13.3 |
0.379210741 |
1.10E-05 |
221080_s_at |
1.307560697 |
0.049479524 |
1134 / 12428 |
MSPI0406S00867496 |
0.89080234 |
0.00117994 |
NM_002463 |
MX2 |
myxovirus (influenza virus) resistance 2 (mouse) |
chr21q22.3 |
0.34846572 |
5.95E-05 |
204994_at |
1.426267179 |
0.035458075 |
901 / 12428 |
MSPI0406S00948355 |
0.724547232 |
0.01101847 |
NM_002692 |
POLE2 |
polymerase (DNA directed), epsilon 2 (p59 subunit) |
chr14q21-q22 |
0.309517311 |
0.000398675 |
205909_at |
1.443058943 |
0.012829967 |
504 / 12428 |
MSPI0406S00674162 |
0.556447784 |
0.006211576 |
NM_001126340 |
ORAI2 |
ORAI calcium release-activated calcium modulator 2 |
chr7q22.1 |
0.303818068 |
0.000515712 |
218812_s_at |
1.787534391 |
0.000836084 |
159 / 12428 |
MSPI0406S00389770 |
0.473409267 |
0.031788869 |
NM_199420 |
POLQ |
polymerase (DNA directed), theta |
chr3q13.33 |
0.28004506 |
0.001428647 |
219510_at |
1.750983423 |
2.51E-05 |
54 / 12428 |
MSPI0406S00192375 |
0.149498828 |
0.04913526 |
NM_012341 |
GTPBP4 |
GTP binding protein 4 |
chr10p15-p14 |
0.245677299 |
0.005368136 |
218238_at |
1.339382314 |
0.025236573 |
749 / 12428 |
MSPI0406S00497942 |
0.184325917 |
0.020081009 |
NM_001100590 |
KIAA0232 |
KIAA0232 |
chr4p16.1 |
0.239107028 |
0.006782375 |
212441_at |
1.44838454 |
1.79E-05 |
47 / 12428 |
MSPI0406S00220410 |
0.672058484 |
0.003202256 |
NM_004740 |
MYO18A /// TIAF1 |
myosin XVIIIA /// TGFB1-induced anti-apoptotic factor 1 |
chr17q11.2 |
0.234398705 |
0.007990257 |
202039_at |
1.485133469 |
0.0150929 |
558 / 12428 |
MSPI0406S00799003 |
0.604837137 |
0.000261968 |
NM_003542 |
HIST1H4C |
histone cluster 1, H4c |
chr6p21.3 |
0.231907029 |
0.008703498 |
205967_at |
1.693813309 |
0.018899791 |
635 / 12428 |
MSPI0406S00313207 |
0.298589654 |
0.034851549 |
NM_000937 |
POLR2A |
polymerase (RNA) II (DNA directed) polypeptide A, 220kDa |
chr17p13.1 |
0.223486996 |
0.011546829 |
202725_at |
1.491030481 |
0.002868583 |
255 / 12428 |
MSPI0406S00788149 |
0.22754 |
0.041208486 |
NM_001163285 |
EWSR1 |
Ewing sarcoma breakpoint region 1 |
chr22q12.2 |
0.217306819 |
0.014123333 |
209214_s_at |
1.217310728 |
0.008608364 |
404 / 12428 |
MSPI0406S00963557 |
0.585056723 |
0.002339502 |
NM_001129 |
AEBP1 |
AE binding protein 1 |
chr7p13 |
0.212910004 |
0.016249041 |
201792_at |
1.913278583 |
0.023604843 |
723 / 12428 |
MSPI0406S00368119 |
0.509446742 |
0.00026268 |
NM_001071 |
TYMS |
thymidylate synthetase |
chr18p11.32 |
0.188398858 |
0.033905935 |
202589_at |
1.574855159 |
0.028554882 |
809 / 12428 |
MSPI0406S00837031 |
0.355168392 |
0.00064585 |
NM_013291 |
CPSF1 |
cleavage and polyadenylation specific factor 1, 160kDa |
chr8q24.23 |
0.184242309 |
0.038119985 |
33132_at |
1.417727533 |
0.004292736 |
297 / 12428 |
MSPI0406S00451370 |
0.693247353 |
0.001555252 |
NM_001069 |
TUBB2A |
tubulin, beta 2A |
chr6p25 |
0.178792944 |
0.044303455 |
204141_at |
2.244442634 |
0.045215999 |
1063 / 12428 |
MSPI0406S00304890 |
1.021649511 |
0.004567718 |