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ALL Methylation Supplementary Table 4-11

List of highly correlated Refseq genes with downregulated FDR<0.05 and hypermethylated FDR<0.05 in BCRABL1

RefSeq Genes Annotation Cytoband Max Pearson Corr Estimate P Max Pearson Corr Max Pearson Corr Affy Probe GEP FC GEP FDR GEP Common Rank Max Pearson Corr HELP Probe MET Delta MET FDR
NM_006563 KLF1 Kruppel-like factor 1 (erythroid) chr19p13.13-p13.12 0.512870803 7.06E-10 210504_at 1.728092362 0.018030265 615 / 12428 MSPI0406S00874250 0.559100216 0.018536168
NM_003119 SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) chr16q24.3 0.379444925 1.08E-05 202104_s_at 1.399000224 0.018600431 629 / 12428 MSPI0406S00780013 0.367227686 0.000559655
NM_024898 DENND1C DENN/MADD domain containing 1C chr19p13.3 0.379210741 1.10E-05 221080_s_at 1.307560697 0.049479524 1134 / 12428 MSPI0406S00867496 0.89080234 0.00117994
NM_002463 MX2 myxovirus (influenza virus) resistance 2 (mouse) chr21q22.3 0.34846572 5.95E-05 204994_at 1.426267179 0.035458075 901 / 12428 MSPI0406S00948355 0.724547232 0.01101847
NM_002692 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) chr14q21-q22 0.309517311 0.000398675 205909_at 1.443058943 0.012829967 504 / 12428 MSPI0406S00674162 0.556447784 0.006211576
NM_001126340 ORAI2 ORAI calcium release-activated calcium modulator 2 chr7q22.1 0.303818068 0.000515712 218812_s_at 1.787534391 0.000836084 159 / 12428 MSPI0406S00389770 0.473409267 0.031788869
NM_199420 POLQ polymerase (DNA directed), theta chr3q13.33 0.28004506 0.001428647 219510_at 1.750983423 2.51E-05 54 / 12428 MSPI0406S00192375 0.149498828 0.04913526
NM_012341 GTPBP4 GTP binding protein 4 chr10p15-p14 0.245677299 0.005368136 218238_at 1.339382314 0.025236573 749 / 12428 MSPI0406S00497942 0.184325917 0.020081009
NM_001100590 KIAA0232 KIAA0232 chr4p16.1 0.239107028 0.006782375 212441_at 1.44838454 1.79E-05 47 / 12428 MSPI0406S00220410 0.672058484 0.003202256
NM_004740 MYO18A /// TIAF1 myosin XVIIIA /// TGFB1-induced anti-apoptotic factor 1 chr17q11.2 0.234398705 0.007990257 202039_at 1.485133469 0.0150929 558 / 12428 MSPI0406S00799003 0.604837137 0.000261968
NM_003542 HIST1H4C histone cluster 1, H4c chr6p21.3 0.231907029 0.008703498 205967_at 1.693813309 0.018899791 635 / 12428 MSPI0406S00313207 0.298589654 0.034851549
NM_000937 POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa chr17p13.1 0.223486996 0.011546829 202725_at 1.491030481 0.002868583 255 / 12428 MSPI0406S00788149 0.22754 0.041208486
NM_001163285 EWSR1 Ewing sarcoma breakpoint region 1 chr22q12.2 0.217306819 0.014123333 209214_s_at 1.217310728 0.008608364 404 / 12428 MSPI0406S00963557 0.585056723 0.002339502
NM_001129 AEBP1 AE binding protein 1 chr7p13 0.212910004 0.016249041 201792_at 1.913278583 0.023604843 723 / 12428 MSPI0406S00368119 0.509446742 0.00026268
NM_001071 TYMS thymidylate synthetase chr18p11.32 0.188398858 0.033905935 202589_at 1.574855159 0.028554882 809 / 12428 MSPI0406S00837031 0.355168392 0.00064585
NM_013291 CPSF1 cleavage and polyadenylation specific factor 1, 160kDa chr8q24.23 0.184242309 0.038119985 33132_at 1.417727533 0.004292736 297 / 12428 MSPI0406S00451370 0.693247353 0.001555252
NM_001069 TUBB2A tubulin, beta 2A chr6p25 0.178792944 0.044303455 204141_at 2.244442634 0.045215999 1063 / 12428 MSPI0406S00304890 1.021649511 0.004567718