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ALL Methylation Supplementary Table 4-10

List of highly correlated Refseq genes with upregulated FDR<0.05 and hypomethylated FDR<0.05 in ERGr_B

RefSeq Genes Annotation Cytoband Max Pearson Corr Estimate P Max Pearson Corr Max Pearson Corr Affy Probe GEP FC GEP FDR GEP Common Rank Max Pearson Corr HELP Probe MET Delta MET FDR
NM_012108 STAP1 signal transducing adaptor family member 1 chr4q13.2 0.461468826 4.75E-08 220059_at -16.28125819 4.81E-16 3 / 12428 MSPI0406S00233470 -0.390819441 0.003455552
NM_001134375 CCNJ cyclin J chr10pter-q26.12 0.43520177 3.17E-07 219470_x_at -2.112493084 1.09E-06 75 / 12428 MSPI0406S00529821 -1.326420784 0.000686756
NM_013284 POLM polymerase (DNA directed), mu chr7p13 0.41953279 9.13E-07 222238_s_at -2.651920346 0.004469174 488 / 12428 MSPI0406S00368099 -0.645742016 0.006514526
NM_181523 PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) chr5q13.1 0.370181976 1.84E-05 212239_at -2.380496803 2.74E-08 35 / 12428 MSPI0406S00271740 -1.681639918 6.50E-08
NM_001775 CD38 CD38 molecule chr4p15 0.332577068 0.000133327 205692_s_at -2.330291161 0.005553375 533 / 12428 MSPI0406S00224032 -1.343738735 0.01163509
NM_000308 CTSA cathepsin A chr20q13.1 0.310990251 0.000372702 200661_at -2.42912799 0.000172491 201 / 12428 MSPI0406S00927022 -1.531785742 0.006459419
NM_024734 CLMN calmin (calponin-like, transmembrane) chr14q32.13 0.310467853 0.000381729 213839_at -2.50586384 0.001225604 355 / 12428 MSPI0406S00689865 -0.648534013 0.015524836
NM_033284 TBL1Y transducin (beta)-like 1Y-linked chrYp11.2 0.306400332 0.000459236 211462_s_at -2.160578114 0.012388193 677 / 12428 MSPI0406S01024171 -0.602187066 0.020329321
NM_001039966 GPER G protein-coupled estrogen receptor 1 chr7p22.3 0.299417682 0.000626886 210640_s_at -1.780893511 0.017822255 796 / 12428 MSPI0406S00353042 -1.35805666 0.001731349
NM_001003828 PARVB parvin, beta chr22q13.2-q13.33 0.255747592 0.003707218 37966_at -1.80224608 0.049705583 1311 / 12428 MSPI0406S00975642 -2.195558606 1.15E-19
NM_000079 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle) chr2q24-q32 0.246056135 0.005295267 206633_at -1.713299404 0.049722433 1312 / 12428 MSPI0406S00140655 -3.582078293 8.74E-12
NM_006763 BTG2 BTG family, member 2 chr1q32 0.243810443 0.00574045 201235_s_at -2.548995441 0.000819292 312 / 12428 MSPI0406S00069919 -1.673392543 0.002533362
NM_000210 ITGA6 integrin, alpha 6 chr2q31.1 0.233018974 0.008378539 215177_s_at -5.770692834 1.46E-05 111 / 12428 MSPI0406S00139895 -0.80370051 0.001364889
NM_001162407 CLK1 /// PPIL3 CDC-like kinase 1 /// peptidylprolyl isomerase (cyclophilin)-like 3 chr2q33 /// chr2q33.1 0.190490728 0.0319385 214683_s_at -2.097227118 0.00026658 232 / 12428 MSPI0406S00144678 -0.454232342 1.80E-05
NM_022466 IKZF5 IKAROS family zinc finger 5 (Pegasus) chr10q26 0.188496243 0.033812122 220086_at -1.566767411 0.015416878 755 / 12428 MSPI0406S00540589 -0.227814666 0.03975986