ALL Methylation Supplementary Table 4-10
List of highly correlated Refseq genes with upregulated FDR<0.05 and hypomethylated FDR<0.05 in ERGr_B
| RefSeq |
Genes |
Annotation |
Cytoband |
Max Pearson Corr |
Estimate P Max Pearson Corr |
Max Pearson Corr Affy Probe |
GEP FC |
GEP FDR |
GEP Common Rank |
Max Pearson Corr HELP Probe |
MET Delta |
MET FDR |
| NM_012108 |
STAP1 |
signal transducing adaptor family member 1 |
chr4q13.2 |
0.461468826 |
4.75E-08 |
220059_at |
-16.28125819 |
4.81E-16 |
3 / 12428 |
MSPI0406S00233470 |
-0.390819441 |
0.003455552 |
| NM_001134375 |
CCNJ |
cyclin J |
chr10pter-q26.12 |
0.43520177 |
3.17E-07 |
219470_x_at |
-2.112493084 |
1.09E-06 |
75 / 12428 |
MSPI0406S00529821 |
-1.326420784 |
0.000686756 |
| NM_013284 |
POLM |
polymerase (DNA directed), mu |
chr7p13 |
0.41953279 |
9.13E-07 |
222238_s_at |
-2.651920346 |
0.004469174 |
488 / 12428 |
MSPI0406S00368099 |
-0.645742016 |
0.006514526 |
| NM_181523 |
PIK3R1 |
phosphoinositide-3-kinase, regulatory subunit 1 (alpha) |
chr5q13.1 |
0.370181976 |
1.84E-05 |
212239_at |
-2.380496803 |
2.74E-08 |
35 / 12428 |
MSPI0406S00271740 |
-1.681639918 |
6.50E-08 |
| NM_001775 |
CD38 |
CD38 molecule |
chr4p15 |
0.332577068 |
0.000133327 |
205692_s_at |
-2.330291161 |
0.005553375 |
533 / 12428 |
MSPI0406S00224032 |
-1.343738735 |
0.01163509 |
| NM_000308 |
CTSA |
cathepsin A |
chr20q13.1 |
0.310990251 |
0.000372702 |
200661_at |
-2.42912799 |
0.000172491 |
201 / 12428 |
MSPI0406S00927022 |
-1.531785742 |
0.006459419 |
| NM_024734 |
CLMN |
calmin (calponin-like, transmembrane) |
chr14q32.13 |
0.310467853 |
0.000381729 |
213839_at |
-2.50586384 |
0.001225604 |
355 / 12428 |
MSPI0406S00689865 |
-0.648534013 |
0.015524836 |
| NM_033284 |
TBL1Y |
transducin (beta)-like 1Y-linked |
chrYp11.2 |
0.306400332 |
0.000459236 |
211462_s_at |
-2.160578114 |
0.012388193 |
677 / 12428 |
MSPI0406S01024171 |
-0.602187066 |
0.020329321 |
| NM_001039966 |
GPER |
G protein-coupled estrogen receptor 1 |
chr7p22.3 |
0.299417682 |
0.000626886 |
210640_s_at |
-1.780893511 |
0.017822255 |
796 / 12428 |
MSPI0406S00353042 |
-1.35805666 |
0.001731349 |
| NM_001003828 |
PARVB |
parvin, beta |
chr22q13.2-q13.33 |
0.255747592 |
0.003707218 |
37966_at |
-1.80224608 |
0.049705583 |
1311 / 12428 |
MSPI0406S00975642 |
-2.195558606 |
1.15E-19 |
| NM_000079 |
CHRNA1 |
cholinergic receptor, nicotinic, alpha 1 (muscle) |
chr2q24-q32 |
0.246056135 |
0.005295267 |
206633_at |
-1.713299404 |
0.049722433 |
1312 / 12428 |
MSPI0406S00140655 |
-3.582078293 |
8.74E-12 |
| NM_006763 |
BTG2 |
BTG family, member 2 |
chr1q32 |
0.243810443 |
0.00574045 |
201235_s_at |
-2.548995441 |
0.000819292 |
312 / 12428 |
MSPI0406S00069919 |
-1.673392543 |
0.002533362 |
| NM_000210 |
ITGA6 |
integrin, alpha 6 |
chr2q31.1 |
0.233018974 |
0.008378539 |
215177_s_at |
-5.770692834 |
1.46E-05 |
111 / 12428 |
MSPI0406S00139895 |
-0.80370051 |
0.001364889 |
| NM_001162407 |
CLK1 /// PPIL3 |
CDC-like kinase 1 /// peptidylprolyl isomerase (cyclophilin)-like 3 |
chr2q33 /// chr2q33.1 |
0.190490728 |
0.0319385 |
214683_s_at |
-2.097227118 |
0.00026658 |
232 / 12428 |
MSPI0406S00144678 |
-0.454232342 |
1.80E-05 |
| NM_022466 |
IKZF5 |
IKAROS family zinc finger 5 (Pegasus) |
chr10q26 |
0.188496243 |
0.033812122 |
220086_at |
-1.566767411 |
0.015416878 |
755 / 12428 |
MSPI0406S00540589 |
-0.227814666 |
0.03975986 |