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ALL Methylation Supplementary Data

84 differentially hypermethylated regions in Hyperdiploid [G1], compared with nonHyper_B [G2]

ProbeSet Genes Refseq Delta Mean Log 2 Ratio G1 Mean Log 2 Ratio G2 FDR T.Statistic P.Value
MSPI0406S00232069 PPAT /// PAICS NM_002703 /// NM_006452 /// NM_001079524 /// NM_001079525 2.628976578 -0.958539145 1.670437433 6.22E-25 -14.43553999 2.43E-29
MSPI0406S00093820 KCNF1 NM_002236 1.376633212 0.181118432 1.557751644 1.51E-10 -7.8195084 1.24E-12
MSPI0406S00964167 HORMAD2 NM_152510 1.715047174 -0.010959244 1.70408793 1.76E-10 -7.780655691 1.54E-12
MSPI0406S00199004 FAIM NM_001033030 /// NM_001033031 /// NM_001033032 /// NM_018147 1.7511941 -0.487577335 1.263616765 3.09E-10 -7.643316887 3.26E-12
MSPI0406S00181757 APPL1 NM_012096 1.748489001 -0.710386011 1.03810299 5.30E-10 -7.509734336 6.74E-12
MSPI0406S00919227 DUSP15 /// TTLL9 NM_001012644 /// NM_080611 /// NM_177991 /// NM_001008409 1.607366244 -0.066541714 1.54082453 1.38E-09 -7.287951673 2.23E-11
MSPI0406S00027418 LCK NM_001042771 1.437481675 0.890397411 2.327879086 1.77E-09 -7.228752474 3.06E-11
MSPI0406S00199446 CLSTN2 NM_022131 1.161202726 0.284850956 1.446053682 2.04E-09 -7.196831677 3.62E-11
MSPI0406S00743291 TXNDC11 NM_015914 1.295444259 0.203022075 1.498466334 2.86E-09 -7.116326106 5.56E-11
MSPI0406S00051145 CSDE1 NM_001007553 /// NM_001130523 /// NM_007158 1.001427765 2.149178367 3.150606132 6.56E-09 -6.922995226 1.54E-10
MSPI0406S00626672 1.602734243 -0.002882598 1.599851645 1.03E-08 -6.81753495 2.67E-10
MSPI0406S00610289 ASB8 NM_024095 1.763964041 -1.237717535 0.526246506 2.02E-08 -6.656148212 6.15E-10
MSPI0406S00847352 SETBP1 NM_001130110 /// NM_015559 1.08409331 0.086243438 1.170336748 2.46E-08 -6.60893485 7.83E-10
MSPI0406S00663553 COL4A1 /// COL4A2 NM_001845 /// NM_001846 1.038896924 0.441996055 1.480892979 2.90E-08 -6.568201196 9.65E-10
MSPI0406S00918563 1.854672616 -0.696354583 1.158318033 4.83E-08 -6.448933184 1.77E-09
MSPI0406S00555316 TEAD1 NM_021961 1.097024851 0.677491975 1.774516826 7.77E-08 -6.335472888 3.14E-09
MSPI0406S00049993 C1orf183 NM_019099 1.06954856 0.093696512 1.163245072 1.11E-07 -6.251376338 4.78E-09
MSPI0406S00313168 HIST1H1C NM_005319 1.573365217 -0.926297661 0.647067556 1.26E-07 -6.222057486 5.53E-09
MSPI0406S00706970 OIP5 /// NUSAP1 NM_007280 /// NM_001129897 /// NM_016359 /// NM_018454 1.046552765 0.202844427 1.249397192 2.18E-07 -6.091618897 1.05E-08
MSPI0406S00176030 SCAP NM_012235 1.61793298 -0.146957349 1.470975631 3.04E-07 -6.009730483 1.57E-08
MSPI0406S00437426 VPS13B NM_015243 /// NM_017890 /// NM_152564 /// NM_181661 1.414193769 0.481853473 1.896047242 5.22E-07 -5.87949542 2.96E-08
MSPI0406S00111802 ARHGAP25 NM_001166276 /// NM_014882 1.480580476 0.726459039 2.207039515 6.41E-07 -5.830053753 3.76E-08
MSPI0406S00056455 SLC39A1 /// CREB3L4 NM_014437 /// NM_130898 2.029769537 -0.995831813 1.033937724 7.08E-07 -5.803813281 4.27E-08
MSPI0406S00556273 RPS13 NM_001017 1.02198551 0.83854346 1.86052897 8.30E-07 -5.764220228 5.16E-08
MSPI0406S00079367 ABCB10 NM_012089 1.157575341 -1.451814078 -0.294238737 1.21E-06 -5.669639641 8.08E-08
MSPI0406S00845076 DSC2 NM_004949 /// NM_024422 1.073361275 0.298732614 1.372093889 1.49E-06 -5.618125643 1.03E-07
MSPI0406S00618028 1.034016449 1.358704058 2.392720507 1.93E-06 -5.555855656 1.38E-07
MSPI0406S00647610 POMP NM_015932 1.550371661 0.660583937 2.210955598 1.96E-06 -5.551627733 1.41E-07
MSPI0406S00307373 SLC35B3 NM_001142540 /// NM_001142541 /// NM_015948 1.415921017 -0.357006928 1.058914089 2.05E-06 -5.53976601 1.49E-07
MSPI0406S00267999 1.238752779 -2.52169443 -1.282941651 2.16E-06 -5.527746937 1.57E-07
MSPI0406S00253736 PDLIM3 NM_001114107 /// NM_014476 1.111052269 0.496243458 1.607295727 2.21E-06 -5.521393764 1.62E-07
MSPI0406S00359015 2.112089349 -2.191303173 -0.079213824 2.36E-06 -5.504490922 1.75E-07
MSPI0406S00604038 WBP11 /// C12orf60 NM_016312 /// NM_175874 1.078002965 0.398142469 1.476145434 2.51E-06 -5.488777149 1.89E-07
MSPI0406S00748505 ACSM3 NM_005622 /// NM_202000 1.251951687 1.350696924 2.602648611 2.74E-06 -5.467040483 2.09E-07
MSPI0406S00044938 SEP15 /// HS2ST1 NM_004261 /// NM_203341 /// NM_001134492 /// NM_012262 1.100416838 1.559271426 2.659688264 3.16E-06 -5.430988792 2.46E-07
MSPI0406S00176031 SCAP NM_012235 1.472381377 1.283012114 2.755393491 3.43E-06 -5.411283558 2.70E-07
MSPI0406S00056186 NPR1 NM_000906 1.387091959 0.723437754 2.110529713 4.03E-06 -5.368236303 3.29E-07
MSPI0406S00254314 FAT1 NM_005245 1.269340544 0.070721034 1.340061578 4.35E-06 -5.349219113 3.59E-07
MSPI0406S00616306 INHBE /// GLI1 NM_031479 /// NM_001160045 /// NM_005269 1.038546926 0.169806573 1.208353499 4.47E-06 -5.342183357 3.70E-07
MSPI0406S00092398 ASAP2 NM_001135191 /// NM_003887 1.011299349 -1.450506172 -0.439206823 4.53E-06 -5.338948949 3.76E-07
MSPI0406S00618944 BEST3 NM_032735 1.398466122 -1.472608336 -0.074142214 4.72E-06 -5.329100612 3.93E-07
MSPI0406S00626671 1.236540396 -2.062366221 -0.825825825 6.43E-06 -5.250810391 5.61E-07
MSPI0406S00711934 LOC145783 /// TCF12 NR_015419 /// NM_003205 /// NM_207036 /// NM_207037 /// NM_207038 1.061835759 -0.022707528 1.039128231 9.66E-06 -5.146250052 8.98E-07
MSPI0406S00933297 TFAP2C NM_003222 1.010403679 0.778351378 1.788755057 1.30E-05 -5.068014271 1.27E-06
MSPI0406S00990283 CNKSR2 NM_014927 1.588500724 -1.221862483 0.366638241 1.32E-05 -5.064591776 1.29E-06
MSPI0406S00190675 PHLDB2 NM_001134438 /// NM_145753 /// NM_001134439 1.408308462 -1.935545228 -0.527236766 1.63E-05 -5.008493521 1.65E-06
MSPI0406S00282529 FBN2 NM_001999 1.023305935 1.291166142 2.314472077 1.66E-05 -5.004347332 1.68E-06
MSPI0406S00421320 EXTL3 NM_001440 1.422850148 -1.132524443 0.290325705 2.04E-05 -4.948588391 2.15E-06
MSPI0406S00114466 HK2 NM_000189 1.286713088 -0.397375454 0.889337634 4.57E-05 -4.727209153 5.56E-06
MSPI0406S00473700 CDC14B NM_003671 /// NM_033331 1.257743824 0.724596798 1.982340622 5.12E-05 -4.694830379 6.38E-06
MSPI0406S00579448 C11orf30 NM_020193 1.064441818 -0.088508993 0.975932825 5.38E-05 -4.680796542 6.76E-06
MSPI0406S00390392 RELN NM_005045 /// NM_173054 1.097391917 0.636918985 1.734310902 6.82E-05 -4.612875001 8.99E-06
MSPI0406S00290716 TNIP1 NM_006058 1.122930815 1.01375033 2.136681145 7.01E-05 -4.604624869 9.30E-06
MSPI0406S00308857 1.904922281 -0.391337862 1.513584419 8.93E-05 -4.538174867 1.23E-05
MSPI0406S00962017 HPS4 /// SRRD NM_022081 /// NM_152841 /// NM_001013694 1.065082559 0.825698384 1.890780943 0.000120837 -4.451638304 1.75E-05
MSPI0406S00996730 USP11 NM_004651 1.333008166 -0.21831838 1.114689786 0.000165384 -4.359430583 2.53E-05
MSPI0406S00255932 1.650516491 -1.141171474 0.509345017 0.000192157 -4.316428814 3.01E-05
MSPI0406S00857823 1.484765798 0.420452092 1.90521789 0.000210914 -4.28866017 3.36E-05
MSPI0406S00046205 GFI1 NM_001127215 /// NM_001127216 /// NM_005263 1.111989109 -0.95075505 0.161234059 0.00023316 -4.25922057 3.78E-05
MSPI0406S00467847 HNRNPK /// RMI1 NM_002140 /// NM_031262 /// NM_031263 /// NM_024945 1.146831897 1.464135076 2.610966973 0.000321989 -4.162157752 5.53E-05
MSPI0406S00970794 APOBEC3A NM_145699 1.000494755 -1.286023103 -0.285528348 0.000370234 -4.119512018 6.52E-05
MSPI0406S00917430 CST8 NM_005492 1.483885454 -2.444427046 -0.960541592 0.000404754 -4.091745781 7.25E-05
MSPI0406S00483365 PBX3 NM_006195 /// NR_024122 /// NR_024123 /// NM_001134778 1.002511484 1.386652662 2.389164146 0.000419291 -4.081772638 7.54E-05
MSPI0406S00803475 ACACA /// TADA2A NM_198834 /// NM_198839 /// NM_001166105 /// NM_001488 /// NM_133439 1.044927185 -1.176409883 -0.131482698 0.000446644 -4.062498274 8.12E-05
MSPI0406S00667523 OSGEP /// APEX1 NM_017807 /// NM_001641 /// NM_080648 /// NM_080649 1.221492196 -0.67286982 0.548622376 0.000453073 -4.05774935 8.26E-05
MSPI0406S00085668 1.232729829 -1.658283333 -0.425553504 0.000462743 -4.051602983 8.46E-05
MSPI0406S00688763 C14orf142 /// UBR7 NM_032490 /// NM_001100417 /// NM_175748 1.064800606 -2.470936796 -1.40613619 0.000471053 -4.045819852 8.65E-05
MSPI0406S00204489 LOC100128164 /// SEC62 NR_027622 /// NR_024409 /// NM_003262 1.121864137 1.040668544 2.162532681 0.000651186 -3.944148207 0.000127026
MSPI0406S00105999 SRBD1 NM_018079 1.322541631 -1.699821788 -0.377280157 0.000676997 -3.931468504 0.000133198
MSPI0406S00316861 HLA-DQA1 NM_002122 1.148779746 -1.859050585 -0.710270839 0.000685081 -3.927867099 0.000135003
MSPI0406S00914902 1.033879913 -0.891899046 0.141980867 0.000830334 -3.868071744 0.000168591
MSPI0406S00942133 1.067054316 -0.471442857 0.595611459 0.000988096 -3.8118529 0.000207303
MSPI0406S00558995 PAX6 NM_000280 /// NM_001604 1.093553385 0.560959719 1.654513104 0.001000911 -3.80741298 0.000210696
MSPI0406S00283248 RAD50 NM_005732 /// NM_133482 1.125311316 -1.973856709 -0.848545393 0.001474431 -3.680712137 0.000332958
MSPI0406S00971929 1.08539068 -1.322928387 -0.237537707 0.001521776 -3.670545797 0.000345246
MSPI0406S00319594 ETV7 NM_016135 1.271578867 -1.660615192 -0.389036325 0.002270548 -3.535335963 0.00055526
MSPI0406S00434315 CHMP4C NM_152284 1.274150442 -0.212418698 1.061731744 0.002667137 -3.480340954 0.000671188
MSPI0406S00556644 MYOD1 NM_002478 1.041109379 0.734594624 1.775704003 0.002723975 -3.472964458 0.000688365
MSPI0406S00396920 CALD1 NM_004342 /// NM_033138 /// NM_033157 1.233658465 -2.927528919 -1.693870454 0.003101829 -3.428148183 0.00080193
MSPI0406S00602696 CSDA NM_001145426 /// NM_003651 1.03085168 -0.641353035 0.389498645 0.003268669 -3.409257515 0.000854879
MSPI0406S00071042 CNTN2 NM_005076 1.040648577 -1.105873875 -0.065225298 0.01154409 -2.941183743 0.003837053
MSPI0406S00934941 1.04663702 -0.029610591 1.017026429 0.013108261 -2.889017686 0.004490646
MSPI0406S00203408 KPNA4 NM_002268 1.010077518 -1.207083473 -0.197005955 0.017548941 -2.771097901 0.006359614
MSPI0406S00809676 GFAP NM_002055 /// NM_001131019 1.020968098 -1.57771757 -0.556749472 0.022856356 -2.661365311 0.008708142