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ALL Methylation Supplementary Data

151 differentially hypomethylated regions in TCF3 [G1], compared with nonTCF3B [G2]

ProbeSet Genes Refseq Delta Mean Log 2 Ratio G1 Mean Log 2 Ratio G2 FDR T.Statistic P.Value
MSPI0406S00100074 ZNF512 NM_032434 -4.713913297 2.685874397 -2.0280389 2.30E-58 30.30132751 8.97E-63
MSPI0406S00159043 -1.723062358 1.067649287 -0.655413071 2.60E-47 24.18501592 2.03E-51
MSPI0406S00159044 -2.700716997 1.559781888 -1.140935109 1.60E-42 21.78370076 1.88E-46
MSPI0406S00039649 -3.005396188 0.627247983 -2.378148205 3.29E-32 17.16187662 5.14E-36
MSPI0406S00748727 CRYM NM_001888 -3.34935375 2.087945407 -1.261408343 6.00E-22 12.97859272 1.17E-25
MSPI0406S00100075 ZNF512 NM_032434 -2.716808883 2.694637072 -0.022171811 4.75E-21 12.5956398 1.11E-24
MSPI0406S00447330 -3.287797038 1.930464044 -1.357332994 1.06E-20 12.43259994 2.91E-24
MSPI0406S00765549 -2.490919104 1.995742453 -0.495176651 1.96E-14 9.957116885 6.32E-18
MSPI0406S00527148 WAPAL NM_015045 -2.711520984 0.563406767 -2.148114217 1.96E-14 9.942613001 6.88E-18
MSPI0406S00060099 SLAMF1 NM_003037 -2.47833718 1.807122674 -0.671214506 1.14E-13 9.62151046 4.47E-17
MSPI0406S00069855 MYBPH NM_004997 -2.941275947 1.798417048 -1.142858899 4.41E-13 9.372281073 1.90E-16
MSPI0406S00256782 -1.746459351 1.343478557 -0.402980794 1.21E-11 8.78011477 5.69E-15
MSPI0406S00421319 EXTL3 NM_001440 -1.357983058 -0.648904626 -2.006887684 2.77E-10 8.186618847 1.62E-13
MSPI0406S00765550 -1.699379148 1.389364918 -0.31001423 5.53E-10 8.050873836 3.46E-13
MSPI0406S00973720 FAM109B /// C22orf32 NM_001002034 /// NM_033318 -1.754568326 1.221704243 -0.532864083 4.27E-09 7.648326564 3.17E-12
MSPI0406S00197488 -2.703406783 2.395974099 -0.307432684 9.01E-09 7.50148639 7.04E-12
MSPI0406S00107351 LHCGR NM_000233 -1.423328855 1.525404606 0.102075751 5.12E-08 7.1598612 4.41E-11
MSPI0406S00002546 -1.267330147 -0.509913847 -1.777243994 7.84E-08 7.063258412 7.35E-11
MSPI0406S00396812 AKR1B1 NM_001628 -1.72329845 0.856693081 -0.866605369 1.51E-07 6.930978953 1.47E-10
MSPI0406S00490767 SURF1 /// SURF2 NM_003172 /// NM_017503 -2.099049567 1.828216969 -0.270832598 1.69E-07 6.894950175 1.78E-10
MSPI0406S00622186 PLXNC1 NM_005761 -2.545193567 1.486622014 -1.058571553 1.94E-07 6.861081146 2.12E-10
MSPI0406S00890537 WDR87 /// SIPA1L3 NM_031951 /// NM_015073 -2.081529672 1.966801177 -0.114728495 2.76E-07 6.787083923 3.12E-10
MSPI0406S00821660 NOL11 NM_015462 -2.19969716 1.264761748 -0.934935412 3.35E-07 6.742882502 3.93E-10
MSPI0406S00421320 EXTL3 NM_001440 -2.82407781 2.6588502 -0.16522761 8.81E-07 6.548298433 1.07E-09
MSPI0406S00353767 -2.010013119 1.426008054 -0.584005065 9.58E-07 6.525727539 1.20E-09
MSPI0406S00785089 -2.85657556 2.736500085 -0.120075475 1.08E-06 6.490871041 1.43E-09
MSPI0406S00000761 SDF4 /// B3GALT6 NM_016176 /// NM_016547 /// NM_080605 -2.165344412 1.454437159 -0.710907253 1.68E-06 6.386288274 2.43E-09
MSPI0406S00785092 -1.785159377 -0.069777206 -1.854936583 1.80E-06 6.367638656 2.67E-09
MSPI0406S00785090 -3.461674836 2.910990657 -0.550684179 2.25E-06 6.317866226 3.42E-09
MSPI0406S00318883 DEF6 NM_022047 -1.644341358 1.010868201 -0.633473157 2.32E-06 6.301409836 3.72E-09
MSPI0406S00939931 NCRNA00176 NR_027686 /// NR_027687 -2.243126656 1.718271343 -0.524855313 2.61E-06 6.268267679 4.39E-09
MSPI0406S00841621 -1.810651583 -0.002737674 -1.813389257 2.98E-06 6.232850154 5.24E-09
MSPI0406S00712354 LIPC NM_000236 -1.142039251 -1.462288113 -2.604327364 4.12E-06 6.163221095 7.40E-09
MSPI0406S00239200 NFKB1 NM_001165412 /// NM_003998 -1.22886751 -0.603924302 -1.832791812 9.44E-06 5.97729367 1.84E-08
MSPI0406S00610289 ASB8 NM_024095 -2.547998887 2.572091707 0.02409282 1.24E-05 5.917787803 2.46E-08
MSPI0406S00257197 TERT NM_198253 /// NM_198255 -1.526303181 0.975434387 -0.550868794 1.28E-05 5.906312354 2.60E-08
MSPI0406S00257196 TERT NM_198253 /// NM_198255 -2.322286108 1.79942257 -0.522863538 1.35E-05 5.891381903 2.80E-08
MSPI0406S00035450 NSUN4 NM_199044 -2.036869154 0.045842321 -1.991026833 1.81E-05 5.826575585 3.82E-08
MSPI0406S00002229 LOC100129534 NR_024489 -1.45044816 0.764587604 -0.685860556 1.86E-05 5.817714203 3.99E-08
MSPI0406S00209786 ADIPOQ NM_004797 -1.534765583 0.126475493 -1.40829009 1.99E-05 5.798927061 4.36E-08
MSPI0406S00486208 PHYHD1 NM_001100876 /// NM_174933 /// NM_001100877 -1.723514676 1.476852427 -0.246662249 3.35E-05 5.678924501 7.73E-08
MSPI0406S00414851 BLK NM_001715 -1.634796367 0.759638893 -0.875157474 3.77E-05 5.646852355 8.99E-08
MSPI0406S00841622 -1.780182729 0.182634734 -1.597547995 4.07E-05 5.627334963 9.86E-08
MSPI0406S00881769 LPAR2 NM_004720 -1.976908883 1.506707295 -0.470201588 6.07E-05 5.535426795 1.52E-07
MSPI0406S00973722 FAM109B /// C22orf32 NM_001002034 /// NM_033318 -2.383095111 3.035717041 0.65262193 6.76E-05 5.504996747 1.75E-07
MSPI0406S00028749 GJA4 NM_002060 -1.991282037 1.787464621 -0.203817416 9.44E-05 5.411630607 2.69E-07
MSPI0406S00209787 ADIPOQ NM_004797 -1.078888833 -0.449388877 -1.52827771 0.00012898 5.340640941 3.73E-07
MSPI0406S00162016 PDCD1 NM_005018 -1.11254314 1.307462284 0.194919144 0.000141363 5.313984268 4.21E-07
MSPI0406S00353768 -1.139255132 0.837211598 -0.302043534 0.000141363 5.311826398 4.25E-07
MSPI0406S00247290 MND1 NM_032117 -1.148083637 0.424298367 -0.72378527 0.000152339 5.292549093 4.64E-07
MSPI0406S00231177 RASL11B NM_023940 -3.016429439 2.049182436 -0.967247003 0.00015871 5.280720843 4.90E-07
MSPI0406S00017847 RNF186 NM_019062 -1.703624332 0.834890099 -0.868734233 0.00019327 5.228932592 6.19E-07
MSPI0406S00807561 PSMC3IP NM_013290 /// NM_016556 -1.450691199 0.260705404 -1.189985795 0.000246314 5.161778508 8.37E-07
MSPI0406S00971930 -1.344372334 -0.11543927 -1.459811604 0.000289482 5.108227541 1.06E-06
MSPI0406S00733705 MRPL28 NM_006428 -1.291860365 2.00826202 0.716401655 0.000298108 5.099239373 1.11E-06
MSPI0406S00870091 ACTL9 NM_178525 -1.585153656 2.113349154 0.528195498 0.000306023 5.090977668 1.15E-06
MSPI0406S00806077 TNS4 NM_032865 -1.033606815 -1.072091767 -2.105698582 0.000338916 5.06559436 1.28E-06
MSPI0406S00806078 TNS4 NM_032865 -1.235020749 0.017294621 -1.217726128 0.000385378 5.029584855 1.51E-06
MSPI0406S00753214 LAT NM_001014989 /// NM_001014987 /// NM_001014988 /// NM_014387 -1.275600046 1.779116083 0.503516037 0.000436265 4.996858595 1.74E-06
MSPI0406S00973723 FAM109B /// C22orf32 NM_001002034 /// NM_033318 -2.081462214 3.971796007 1.890333793 0.000582261 4.911299822 2.53E-06
MSPI0406S00029446 TEKT2 /// ADPRHL2 NM_014466 /// NM_017825 -1.759758106 2.138256295 0.378498189 0.000674391 4.875290855 2.95E-06
MSPI0406S00948834 -1.634353819 -0.406288248 -2.040642067 0.000718412 4.858570797 3.17E-06
MSPI0406S00973719 NAGA /// FAM109B /// C22orf32 NM_000262 /// NM_001002034 /// NM_033318 -1.444857193 0.571061507 -0.873795686 0.000766554 4.837406707 3.47E-06
MSPI0406S00696941 PLD4 NM_138790 -1.569390029 1.856636179 0.28724615 0.000884948 4.797114354 4.13E-06
MSPI0406S00029445 TEKT2 /// ADPRHL2 NM_014466 /// NM_017825 -1.516635689 1.883564068 0.366928379 0.000943295 4.77714384 4.50E-06
MSPI0406S00733975 C16orf11 NM_145270 -1.30615125 2.774462382 1.468311132 0.001293945 4.687546192 6.57E-06
MSPI0406S00179679 GLYCTK NM_001144951 /// NM_145262 /// NR_026699 /// NR_026700 /// NR_026701 /// NR_026702 -1.249681929 1.460468528 0.210786599 0.001480057 4.646409192 7.81E-06
MSPI0406S00825174 -1.345379231 0.957311816 -0.388067415 0.001527092 4.635555647 8.18E-06
MSPI0406S00551382 -1.248671265 0.551788362 -0.696882903 0.001995133 4.562645444 1.11E-05
MSPI0406S00051257 NGF NM_002506 -1.291181109 1.680578649 0.38939754 0.002041777 4.553672106 1.15E-05
MSPI0406S00804573 PIP4K2B NM_003559 -1.877169218 0.55742049 -1.319748728 0.002371358 4.509044363 1.38E-05
MSPI0406S00124982 ACOXL NM_001105516 /// NM_001142807 /// NM_001142808 -1.922960275 3.097346606 1.174386331 0.003458791 4.392711783 2.22E-05
MSPI0406S00271472 MAST4 NM_001164664 /// NM_198828 -1.892242819 1.30548722 -0.586755599 0.003503781 4.387998983 2.26E-05
MSPI0406S00908762 AURKC NM_001015879 /// NM_003160 /// NM_001015878 -1.384526272 0.079389946 -1.305136326 0.004337564 4.320084832 2.97E-05
MSPI0406S00808564 SOST NM_025237 -1.258102518 0.175464035 -1.082638483 0.005086909 4.270624205 3.61E-05
MSPI0406S00207881 MAP6D1 NM_024871 -1.625217876 2.120480118 0.495262242 0.005733434 4.235640761 4.14E-05
MSPI0406S00697331 -1.725422069 1.594456065 -0.130966004 0.005883786 4.226908898 4.29E-05
MSPI0406S00368100 POLM NM_013284 -1.174820936 0.020417303 -1.154403633 0.005883786 4.226323931 4.30E-05
MSPI0406S00617895 MSRB3 NM_001031679 /// NM_198080 -2.173766709 2.352251039 0.17848433 0.006101688 4.215703314 4.48E-05
MSPI0406S00691894 -1.310369038 0.724525901 -0.585843137 0.006973479 4.168265245 5.40E-05
MSPI0406S00788928 VAMP2 NM_014232 -1.2284951 2.595566081 1.367070981 0.008000187 4.123892077 6.41E-05
MSPI0406S00056455 SLC39A1 /// CREB3L4 NM_014437 /// NM_130898 -2.380639568 2.872973174 0.492333606 0.009095953 4.081834567 7.54E-05
MSPI0406S00727463 IDH2 NM_002168 -1.159387224 -0.889680527 -2.049067751 0.010951228 4.024712276 9.37E-05
MSPI0406S00416791 NAT1 NM_000662 /// NM_001160170 /// NM_001160171 /// NM_001160172 /// NM_001160173 /// NM_001160175 /// NM_001160176 -1.241835125 -0.420433762 -1.662268887 0.012481971 3.977991937 0.000111842
MSPI0406S00833698 -1.093396605 0.735318009 -0.358078596 0.012481971 3.977185545 0.000112182
MSPI0406S00447349 -2.187737566 3.063425862 0.875688296 0.012908609 3.965958187 0.000117025
MSPI0406S00640774 -1.303377783 1.392682592 0.089304809 0.013690196 3.946879477 0.000125716
MSPI0406S00306895 SSR1 NM_003144 -1.388339454 2.440918273 1.052578819 0.014831856 3.919829073 0.000139098
MSPI0406S00123406 ST6GAL2 NM_001142351 /// NM_032528 /// NM_001142352 -1.60946656 3.438523045 1.829056485 0.01509938 3.913919175 0.000142197
MSPI0406S00588449 FXYD2 NM_001127489 /// NM_001680 -1.35423072 1.640085294 0.285854574 0.015860519 3.890835116 0.000154942
MSPI0406S00043283 ST6GALNAC3 NM_001160011 /// NM_152996 -1.938325225 2.561863225 0.623538 0.017747309 3.854033639 0.000177536
MSPI0406S00669728 -1.340929712 0.888725473 -0.452204239 0.021273892 3.793114654 0.000221958
MSPI0406S00600858 CDCA3 /// USP5 NM_031299 /// NM_001098536 /// NM_003481 -1.579510649 1.376909706 -0.202600943 0.021835564 3.778408593 0.000234164
MSPI0406S00935610 PHACTR3 NM_080672 -1.410593732 2.737328532 1.3267348 0.023153381 3.758703946 0.00025152
MSPI0406S00888534 FFAR1 NM_005303 -1.372499515 1.136032398 -0.236467117 0.023253379 3.754780953 0.000255118
MSPI0406S00000762 SDF4 /// B3GALT6 NM_016176 /// NM_016547 /// NM_080605 -1.527477161 1.621784893 0.094307732 0.023253379 3.754548843 0.000255332
MSPI0406S00949533 -1.370034478 -0.885632062 -2.25566654 0.023433449 3.749932427 0.000259632
MSPI0406S00578957 GDPD5 NM_030792 -1.002933352 -0.342698554 -1.345631906 0.025122544 3.720579753 0.000288618
MSPI0406S00155755 ARL4C NM_005737 -1.06315751 1.696183808 0.633026298 0.025876418 3.709522173 0.000300312
MSPI0406S00049057 ATXN7L2 NM_153340 -1.138375284 0.551185655 -0.587189629 0.026031182 3.705057473 0.00030516
MSPI0406S00254314 FAT1 NM_005245 -1.447307053 2.45139332 1.004086267 0.028029308 3.674294021 0.000340632
MSPI0406S00281695 -1.822537325 1.876645246 0.054107921 0.028933266 3.661548528 0.000356442
MSPI0406S00179678 GLYCTK NM_001144951 /// NM_145262 /// NR_026699 /// NR_026700 /// NR_026701 /// NR_026702 -1.29920819 1.529726528 0.230518338 0.030367397 3.64298834 0.00038071
MSPI0406S00408256 -1.060767654 1.760670276 0.699902622 0.030367397 3.641959759 0.000382099
MSPI0406S00080109 TRIM67 NM_001004342 -1.754225136 3.554940157 1.800715021 0.030640578 3.636676508 0.000389312
MSPI0406S00215782 CTBP1 /// C4orf42 NM_001012614 /// NM_001328 /// NM_052861 -1.020295102 1.198268243 0.177973141 0.031334276 3.62701563 0.000402836
MSPI0406S00155756 ARL4C NM_005737 -1.384510614 1.060113905 -0.324396709 0.031665646 3.621708529 0.000410453
MSPI0406S00908806 -1.105388518 -0.218163425 -1.323551943 0.032258633 3.61280073 0.000423543
MSPI0406S00352433 -1.160424645 -0.080672625 -1.24109727 0.033878491 3.595497022 0.000450107
MSPI0406S00141030 HOXD1 NM_024501 -1.581501248 2.741245769 1.159744521 0.034140833 3.590793493 0.000457595
MSPI0406S00721452 TSPAN3 NM_005724 /// NM_198902 -1.172061279 0.487963383 -0.684097896 0.034539657 3.584169658 0.000468339
MSPI0406S00754362 TBX6 /// YPEL3 NM_004608 /// NM_031477 /// NM_001145524 -1.542248164 2.917105578 1.374857414 0.038263688 3.548288501 0.000530796
MSPI0406S00153711 B3GNT7 NM_145236 -1.025450909 2.843212681 1.817761772 0.040368758 3.522470072 0.000580505
MSPI0406S00548788 MUPCDH /// SCT NM_021924 /// NM_031264 /// NM_021920 -1.16659635 2.339420547 1.172824197 0.04091649 3.513583015 0.000598606
MSPI0406S00055526 -1.340248561 1.386233674 0.045985113 0.041406497 3.508122696 0.00060999
MSPI0406S00971929 -1.644979435 1.093390833 -0.551588602 0.042253572 3.500709511 0.000625771
MSPI0406S00313168 HIST1H1C NM_005319 -1.517644578 1.766417996 0.248773418 0.042879814 3.495668305 0.000636721
MSPI0406S00180108 ITIH3 NM_002217 -1.018945546 0.816917883 -0.202027663 0.043032726 3.493868825 0.000640673
MSPI0406S00600675 C12orf53 NM_153685 -1.064857946 2.664243445 1.599385499 0.045875234 3.467004076 0.000702487
MSPI0406S00659054 SOX21 NM_007084 -1.14586064 2.828542753 1.682682113 0.050877693 3.424753296 0.000811148
MSPI0406S00618028 -1.068765153 3.195038112 2.126272959 0.05205908 3.415091524 0.00083812
MSPI0406S00541592 -1.226740543 1.805109331 0.578368788 0.052741964 3.407186742 0.000860811
MSPI0406S00629691 -1.260524912 1.221799134 -0.038725778 0.052741964 3.406465148 0.000862911
MSPI0406S00857454 SALL3 NM_171999 -1.288613939 2.581782641 1.293168702 0.052741964 3.406410269 0.00086307
MSPI0406S00918563 -1.699018948 2.393740933 0.694721985 0.052741964 3.406248725 0.000863541
MSPI0406S00265127 -1.34247866 1.717254294 0.374775634 0.054359318 3.395175089 0.000896395
MSPI0406S00367622 HECW1 NM_015052 -2.012067474 2.769428894 0.75736142 0.055288861 3.381796343 0.000937649
MSPI0406S00059958 PEA15 NM_003768 -1.463439571 1.584909627 0.121470056 0.055437048 3.38031379 0.000942328
MSPI0406S00677170 MNAT1 NM_002431 -1.166382702 -0.065254558 -1.23163726 0.060235816 3.350196335 0.001042254
MSPI0406S00918187 -1.112729841 0.322134463 -0.790595378 0.060235816 3.349910459 0.001043249
MSPI0406S00392747 WNT2 NM_003391 /// NR_024047 -1.207356747 2.35314734 1.145790593 0.061098379 3.341528013 0.001072802
MSPI0406S00318913 PPARD NM_006238 /// NM_177435 -1.24252572 -0.351459306 -1.593985026 0.061098379 3.34046756 0.001076596
MSPI0406S00829311 -1.072731981 2.194078375 1.121346394 0.061461596 3.337310734 0.001087965
MSPI0406S00779603 C16orf81 NR_024347 -1.32476415 1.610989562 0.286225412 0.063477418 3.322899262 0.001141305
MSPI0406S00906572 LILRB4 NM_001081438 /// NM_006847 -1.208920469 2.831967145 1.623046676 0.063477418 3.322011777 0.001144668
MSPI0406S00490858 -1.48369369 0.809802716 -0.673890974 0.064573807 3.310670021 0.001188475
MSPI0406S00392748 WNT2 NM_003391 /// NR_024047 -1.321353526 2.6898701 1.368516574 0.065620806 3.302026575 0.001222906
MSPI0406S00459480 C9orf100 NM_032818 -1.17995676 0.057478411 -1.122478349 0.066669113 3.296296447 0.001246242
MSPI0406S00822904 SOX9 NM_000346 -1.298233515 2.958139956 1.659906441 0.067933612 3.289344078 0.001275114
MSPI0406S00244952 -1.092144878 1.384323598 0.29217872 0.06918161 3.274044202 0.001340865
MSPI0406S00939930 NCRNA00176 NR_027686 /// NR_027687 -1.084405209 1.643620898 0.559215689 0.074387166 3.248191433 0.001459199
MSPI0406S00933297 TFAP2C NM_003222 -1.070778282 2.597434797 1.526656515 0.077511136 3.231047806 0.001542959
MSPI0406S00779602 C16orf81 NR_024347 -1.018045711 0.120982958 -0.897062753 0.078664484 3.224343187 0.001576917
MSPI0406S00547542 GPR123 NM_001083909 -1.187852004 2.691556206 1.503704202 0.078793965 3.221970436 0.0015891
MSPI0406S00141029 HOXD1 NM_024501 -1.5212879 3.425658267 1.904370367 0.08065428 3.20890424 0.001657776
MSPI0406S00196537 -1.255954131 1.341412476 0.085458345 0.084843146 3.184819141 0.001791653
MSPI0406S00974944 -1.000205475 0.599306452 -0.400899023 0.086112624 3.178710247 0.001827172
MSPI0406S00134288 NXPH2 NM_007226 -1.195936239 2.682890697 1.486954458 0.087780049 3.169305688 0.001883133
MSPI0406S00996730 USP11 NM_004651 -1.562932514 2.32196825 0.759035736 0.094783598 3.133487619 0.002111158
MSPI0406S00315943 LTA /// TNF NM_001159740 /// NM_000595 /// NM_000594 -1.082676477 1.866631289 0.783954812 0.095519829 3.129949265 0.002135022
MSPI0406S00176030 SCAP NM_012235 -1.438821843 2.508223357 1.069401514 0.099902059 3.109234468 0.002279817