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St. Jude Research >> ALL-Methylation >> SupplementaryTable2 >> Section2-table12

ALL Methylation Supplementary Data

146 differentially hypomethylated regions in BCRABL1 [G1], compared with nonBCRABL1 [G2]

ProbeSet Genes Refseq Delta Mean Log 2 Ratio G1 Mean Log 2 Ratio G2 FDR T.Statistic P.Value
MSPI0406S00459542 GBA2 /// RGP1 NM_020944 /// NM_001080496 -1.217092439 0.067791237 -1.149301202 3.37E-11 9.036236923 1.32E-15
MSPI0406S00370526 -1.179832211 -1.148709914 -2.328542125 6.97E-10 8.316635515 7.84E-14
MSPI0406S00395658 -1.354241326 -0.819043213 -2.173284539 8.72E-10 8.185122211 1.64E-13
MSPI0406S00571814 DPP3 NM_005700 /// NM_130443 -1.090828608 1.232704809 0.141876201 8.72E-10 8.178015597 1.70E-13
MSPI0406S00579448 C11orf30 NM_020193 -1.798641867 2.323117154 0.524475287 7.17E-09 7.76441733 1.68E-12
MSPI0406S00337228 ECHDC1 NM_001002030 /// NM_001105544 /// NM_001105545 /// NM_001139510 /// NM_018479 -1.510526772 2.301374884 0.790848112 7.90E-09 7.694163293 2.47E-12
MSPI0406S00135002 ZEB2 NM_014795 -1.334575802 2.720598108 1.386022306 1.97E-08 7.464545617 8.61E-12
MSPI0406S00616306 INHBE /// GLI1 NM_031479 /// NM_001160045 /// NM_005269 -1.524489322 2.324320798 0.799831476 1.97E-08 7.4515958 9.23E-12
MSPI0406S00242796 INTU NM_015693 -1.510512614 0.878340059 -0.632172555 3.75E-08 7.316925696 1.91E-11
MSPI0406S00604038 WBP11 /// C12orf60 NM_016312 /// NM_175874 -1.524427272 2.584571281 1.060144009 3.87E-08 7.297208749 2.12E-11
MSPI0406S00366408 STARD3NL NM_032016 -1.225053065 1.688227369 0.463174304 5.00E-08 7.224475057 3.12E-11
MSPI0406S00570180 -1.160104312 2.13903665 0.978932338 5.53E-08 7.187332263 3.81E-11
MSPI0406S00944241 C21orf59 NM_021254 -1.288875002 1.851351114 0.562476112 5.53E-08 7.183482167 3.89E-11
MSPI0406S00599414 FGF6 NM_020996 -1.342942822 0.097734362 -1.24520846 5.73E-08 7.166383798 4.26E-11
MSPI0406S00268775 ITGA2 NM_002203 -1.868042994 2.037914127 0.169871133 8.86E-08 7.074599099 6.93E-11
MSPI0406S00246966 FBXW7 NM_001013415 -1.049142559 0.137151416 -0.911991143 9.24E-08 7.05737771 7.58E-11
MSPI0406S00706970 OIP5 /// NUSAP1 NM_007280 /// NM_001129897 /// NM_016359 /// NM_018454 -1.318820062 2.186699348 0.867879286 1.25E-07 6.989157425 1.09E-10
MSPI0406S00316051 C6orf47 /// BAT4 /// CSNK2B NM_021184 /// NM_033177 /// NM_001320 -1.166481325 2.104908752 0.938427427 1.25E-07 6.983366837 1.12E-10
MSPI0406S00556273 RPS13 NM_001017 -1.330154677 2.812256186 1.482101509 1.97E-07 6.879724075 1.93E-10
MSPI0406S00716204 RPL4 /// SNORD18C /// SNORD18B /// SNORD16 /// SNORD18A /// ZWILCH NM_000968 /// NR_002443 /// NR_002442 /// NR_002440 /// NR_002441 /// NM_017975 /// NR_003105 -1.201951514 3.174902065 1.972950551 3.75E-07 6.714862401 4.54E-10
MSPI0406S00131843 CCDC115 /// IMP4 NM_032357 /// NM_033416 -1.029475281 1.638524371 0.60904909 4.83E-07 6.640366295 6.66E-10
MSPI0406S00131844 CCDC115 /// IMP4 NM_032357 /// NM_033416 -1.18446047 1.859850425 0.675389955 5.97E-07 6.571786667 9.47E-10
MSPI0406S00460539 POLR1E NM_022490 -1.012758247 1.502278116 0.489519869 6.47E-07 6.540096251 1.11E-09
MSPI0406S00737783 -1.202703153 2.059070894 0.856367741 6.91E-07 6.518501402 1.24E-09
MSPI0406S00977686 C22orf26 /// LOC150381 NM_018280 /// NR_027034 -1.752760245 2.624579081 0.871818836 1.09E-06 6.416316807 2.09E-09
MSPI0406S00667653 ANG /// RNASE4 NM_001145 /// NM_002937 -1.127466972 2.380471062 1.25300409 4.63E-06 6.062549634 1.22E-08
MSPI0406S00105999 SRBD1 NM_018079 -2.167215473 1.238379284 -0.928836189 4.63E-06 6.060097001 1.23E-08
MSPI0406S00402531 GIMAP5 NM_018384 -1.608957454 1.809164089 0.200206635 6.33E-06 5.96710764 1.94E-08
MSPI0406S00049993 C1orf183 NM_019099 -1.163207449 1.962151761 0.798944312 7.27E-06 5.924261069 2.39E-08
MSPI0406S00531531 SLC25A28 NM_031212 -1.428438159 1.36011156 -0.068326599 7.88E-06 5.898923284 2.70E-08
MSPI0406S00909977 TRIB3 NM_021158 -1.24567577 0.35647655 -0.88919922 9.36E-06 5.845850127 3.48E-08
MSPI0406S00115080 CTNNA2 NM_001164883 /// NM_004389 -1.411487708 2.496924276 1.085436568 9.36E-06 5.841432587 3.56E-08
MSPI0406S00234953 STBD1 NM_003943 -1.958252547 2.725308903 0.767056356 9.36E-06 5.838434594 3.61E-08
MSPI0406S00977681 C22orf26 /// LOC150381 NM_018280 /// NR_027034 -1.404636957 2.086776787 0.68213983 9.36E-06 5.837901036 3.62E-08
MSPI0406S00274162 IQGAP2 NM_006633 -1.010456224 1.347590562 0.337134338 1.53E-05 5.687158925 7.44E-08
MSPI0406S00963559 RHBDD3 /// EWSR1 NM_012265 /// NM_001163285 /// NM_001163286 /// NM_001163287 /// NM_005243 /// NM_013986 -1.155326681 2.130062762 0.974736081 1.73E-05 5.643453989 9.14E-08
MSPI0406S00602696 CSDA NM_001145426 /// NM_003651 -1.816223572 1.758201111 -0.058022461 1.73E-05 5.641278502 9.24E-08
MSPI0406S00164973 C3orf42 /// GHRLOS NR_026829 /// NR_004431 /// NR_024144 /// NR_024145 /// NR_024146 -1.409774147 0.749187452 -0.660586695 1.79E-05 5.632393084 9.63E-08
MSPI0406S00103418 CYP1B1 NM_000104 -1.068474661 -0.782222856 -1.850697517 1.91E-05 5.614763307 1.05E-07
MSPI0406S00334364 GPR6 NM_005284 -1.48467456 1.88519731 0.40052275 2.78E-05 5.509298512 1.71E-07
MSPI0406S00342144 -1.5547 2.309075797 0.754375797 3.12E-05 5.472453171 2.03E-07
MSPI0406S00213866 MFI2 NM_005929 /// NM_033316 -1.021679422 -0.665208552 -1.686887974 3.36E-05 5.451382132 2.24E-07
MSPI0406S00266269 TTC23L NM_144725 -1.187817205 -0.234723247 -1.422540452 3.54E-05 5.438392419 2.38E-07
MSPI0406S00129720 -1.215821866 0.011625179 -1.204196687 3.82E-05 5.409547513 2.72E-07
MSPI0406S00327761 OGFRL1 NM_024576 -1.305093743 1.316584585 0.011490842 4.89E-05 5.336350357 3.80E-07
MSPI0406S00115210 LRRTM1 NM_178839 -1.133960668 1.783814145 0.649853477 5.74E-05 5.284347922 4.82E-07
MSPI0406S00147153 -1.172616084 -1.987620826 -3.16023691 6.38E-05 5.252826965 5.56E-07
MSPI0406S00653687 CCDC70 NM_031290 -1.04343153 -0.109959466 -1.153390996 0.000106639 5.074805444 1.23E-06
MSPI0406S00270455 C5orf43 NM_001048249 -1.146566226 1.26001382 0.113447594 0.000124013 5.026528837 1.53E-06
MSPI0406S00672344 NKX2-1 NM_001079668 /// NM_003317 -1.102407822 2.339973482 1.23756566 0.000132474 5.00714866 1.66E-06
MSPI0406S00266015 ADAMTS12 NM_030955 -1.064946116 2.242581475 1.177635359 0.000141892 4.985953045 1.82E-06
MSPI0406S00364869 -1.151599261 1.562173317 0.410574056 0.000158467 4.950469557 2.13E-06
MSPI0406S00244527 NDUFC1 /// NARG1 NM_002494 /// NM_057175 -1.028720251 -0.382850192 -1.411570443 0.0002072 4.861311715 3.14E-06
MSPI0406S00150109 TUBA4A /// TUBA4B NM_006000 /// NR_003063 -1.263160911 3.144796771 1.88163586 0.000214148 4.848113189 3.32E-06
MSPI0406S01020614 CLIC2 NM_001289 -1.606547565 0.907007969 -0.699539596 0.000217403 4.843777364 3.38E-06
MSPI0406S00447300 -1.272350243 -0.942457114 -2.214807357 0.000228934 4.825398118 3.66E-06
MSPI0406S00143267 TMEFF2 NM_016192 -1.159842735 2.658582475 1.49873974 0.000241824 4.806975656 3.96E-06
MSPI0406S00362936 KIAA0087 NR_022006 -1.245887629 -0.356944129 -1.602831758 0.000255904 4.788217117 4.29E-06
MSPI0406S00942133 -1.473756433 1.662471655 0.188715222 0.000273245 4.76318643 4.77E-06
MSPI0406S00659520 UGGT2 NM_020121 -1.125361785 1.760148115 0.63478633 0.000285342 4.748820535 5.07E-06
MSPI0406S00496663 CACNA1B NM_000718 -1.035104926 0.290966846 -0.74413808 0.000323518 4.709507253 5.99E-06
MSPI0406S00782749 PRPF8 NM_006445 -1.048820871 1.921703077 0.872882206 0.000334163 4.696537264 6.33E-06
MSPI0406S00782750 PRPF8 NM_006445 -1.156530419 2.181288743 1.024758324 0.000394614 4.638830757 8.06E-06
MSPI0406S00279341 PJA2 NM_014819 -1.408555211 2.929051811 1.5204966 0.000395322 4.637945472 8.09E-06
MSPI0406S00513809 CXCL12 NM_000609 /// NM_001033886 /// NM_199168 -1.018685497 0.412538489 -0.606147008 0.000405783 4.627618883 8.45E-06
MSPI0406S00125831 SLC20A1 NM_005415 -1.430008346 1.123261483 -0.306746863 0.00042163 4.614863923 8.91E-06
MSPI0406S00722177 ACSBG1 NM_015162 -1.266166206 0.811414564 -0.454751642 0.000425792 4.611573609 9.04E-06
MSPI0406S00008461 CA6 NM_001215 -1.053345182 -0.18284565 -1.236190832 0.000494224 4.55692762 1.13E-05
MSPI0406S00186172 PDZRN3 NM_015009 -1.119320058 2.810784043 1.691463985 0.000500904 4.549819732 1.17E-05
MSPI0406S00414743 -1.017411858 1.095906743 0.078494885 0.000573253 4.499887148 1.43E-05
MSPI0406S00959472 RTDR1 /// RAB36 NM_014433 /// NM_004914 -1.390792753 0.491319374 -0.899473379 0.0005753 4.497877374 1.45E-05
MSPI0406S00592126 ROBO4 NM_019055 -1.103255279 -0.913287937 -2.016543216 0.000576909 4.496816217 1.45E-05
MSPI0406S00046043 BRDT NM_207189 /// NM_001726 -1.368524471 1.335191405 -0.033333066 0.000615203 4.470327457 1.62E-05
MSPI0406S00074233 PROX1 NM_002763 -1.106254325 3.182176651 2.075922326 0.000875462 4.342761344 2.71E-05
MSPI0406S00652675 -2.17209501 1.756302729 -0.415792281 0.001149299 4.244226253 4.01E-05
MSPI0406S00441014 COL14A1 NM_021110 -1.060488588 2.655723558 1.59523497 0.001153544 4.242231614 4.04E-05
MSPI0406S00418704 FLJ14107 NR_027715 -1.722153129 2.15460618 0.432453051 0.00117684 4.234895729 4.16E-05
MSPI0406S00238038 ATOH1 NM_005172 -1.138036575 2.19375983 1.055723255 0.001256648 4.209327602 4.60E-05
MSPI0406S00985875 NLGN4X NM_020742 /// NM_181332 -1.010239447 2.870325718 1.860086271 0.001334634 4.188858739 4.98E-05
MSPI0406S00330223 SLC35A1 NM_006416 -1.064441518 2.827339884 1.762898366 0.001464192 4.152415082 5.74E-05
MSPI0406S00616791 LRIG3 NM_001136051 /// NM_153377 -1.050038878 1.414238935 0.364200057 0.001779092 4.081101806 7.56E-05
MSPI0406S00147655 LANCL1 /// CPS1 NM_001136574 /// NM_001136575 /// NM_006055 /// NM_001122633 -1.137039952 0.321478444 -0.815561508 0.002078531 4.024008501 9.40E-05
MSPI0406S00977704 -1.228635619 2.50997318 1.281337561 0.002124072 4.013335766 9.79E-05
MSPI0406S00141030 HOXD1 NM_024501 -1.252047467 2.342044611 1.089997144 0.002149123 4.00717509 0.00010017
MSPI0406S00280105 KCNN2 NM_021614 -1.236038257 2.353041448 1.117003191 0.002149123 4.007127601 0.000100188
MSPI0406S00912738 PCNA /// CDS2 NM_002592 /// NM_003818 -1.250051674 2.206791105 0.956739431 0.002174128 4.002527436 0.000101948
MSPI0406S00500513 IL2RA NM_000417 -1.116148769 2.405163054 1.289014285 0.002262257 3.983771601 0.000109436
MSPI0406S00908743 ZNF264 NM_003417 -1.167517937 0.513125135 -0.654392802 0.002385437 3.96019616 0.000119593
MSPI0406S00365314 -1.811297863 2.883624749 1.072326886 0.002482658 3.944509334 0.000126843
MSPI0406S00326220 -1.191050883 -0.007504578 -1.198555461 0.002499691 3.941968352 0.000128057
MSPI0406S00287492 PCDHGB7 /// PCDHGA11 NM_018927 /// NM_032101 /// NM_018914 /// NM_032091 /// NM_032092 -1.219340216 3.03692066 1.817580444 0.002647419 3.920954436 0.000138521
MSPI0406S00245299 GAB1 NM_002039 /// NM_207123 -1.666173045 2.369928729 0.703755684 0.002892065 3.885485019 0.000158055
MSPI0406S00235682 FGF5 NM_004464 /// NM_033143 -1.097795621 3.27953556 2.181739939 0.002931607 3.878860294 0.000161982
MSPI0406S00834061 -1.451467467 1.557922295 0.106454828 0.003319854 3.836465433 0.000189402
MSPI0406S00857454 SALL3 NM_171999 -1.026409063 2.261882533 1.23547347 0.003435935 3.823126853 0.000198904
MSPI0406S00178801 CISH /// MAPKAPK3 NM_013324 /// NM_145071 /// NM_004635 -1.249812646 2.014095323 0.764282677 0.003469691 3.818887847 0.000202018
MSPI0406S00704580 C15orf24 /// PGBD4 NM_020154 /// NM_152595 -1.367974693 2.068170636 0.700195943 0.003548723 3.810360119 0.000208422
MSPI0406S00023289 SFN NM_006142 -1.143162282 0.408161216 -0.735001066 0.003906417 3.771511107 0.000240115
MSPI0406S00553474 RIC3 NM_001135109 /// NM_024557 -1.050014502 -0.256701622 -1.306716124 0.004099501 3.754749575 0.000255157
MSPI0406S00237718 FAM190A NM_001145065 -1.03108036 2.485417063 1.454336703 0.004542452 3.717020371 0.000292346
MSPI0406S00175023 LIMD1 NM_014240 -1.089685445 1.788696933 0.699011488 0.004567718 3.71296197 0.000296639
MSPI0406S00484885 -1.518552544 0.97184029 -0.546712254 0.004744341 3.699367897 0.000311457
MSPI0406S00054201 MTMR11 NM_001145862 /// NM_181873 -1.32897774 1.961273355 0.632295615 0.004747434 3.698853674 0.000312031
MSPI0406S00233293 EPHA5 NM_004439 /// NM_182472 -1.108797507 3.003492347 1.89469484 0.004942106 3.682832307 0.000330426
MSPI0406S00258559 IRX2 /// C5orf38 NM_001134222 /// NM_033267 /// NM_178569 -1.223817323 2.766139192 1.542321869 0.005067493 3.673294934 0.000341859
MSPI0406S00142164 ZNF804A NM_194250 -1.123729058 2.660987213 1.537258155 0.005119801 3.667563287 0.000348909
MSPI0406S00398632 HIPK2 /// TBXAS1 NM_001113239 /// NM_022740 /// NM_001130966 /// NM_001166254 -1.040009098 2.168928314 1.128919216 0.005140554 3.665622057 0.000351328
MSPI0406S00325981 TINAG NM_014464 -1.052165344 0.034103992 -1.018061352 0.005906599 3.608710872 0.0004297
MSPI0406S00075279 BPNT1 /// IARS2 NM_006085 /// NM_018060 -1.057688971 -0.430854477 -1.488543448 0.005906599 3.60807847 0.000430657
MSPI0406S00297985 MSX2 NM_002449 -1.193968245 2.530505414 1.336537169 0.006213178 3.587550956 0.00046284
MSPI0406S00619691 GLIPR1L2 NM_152436 -1.219585594 0.369931141 -0.849654453 0.006272675 3.583754575 0.000469036
MSPI0406S00235650 PRDM8 NM_020226 -1.059911471 2.481934587 1.422023116 0.006421641 3.575043014 0.000483549
MSPI0406S00518037 -1.14008968 1.871253229 0.731163549 0.006720327 3.557437911 0.000514181
MSPI0406S00558499 BDNF NM_001143805 /// NM_001143806 /// NM_001143807 /// NM_170731 /// NM_170732 -1.067231414 2.600781029 1.533549615 0.006785692 3.553194141 0.000521833
MSPI0406S00160993 MTERFD2 NR_028049 /// NR_028050 /// NR_028051 /// NM_182501 -1.111496575 1.212614081 0.101117506 0.006804589 3.551665511 0.000524616
MSPI0406S00141029 HOXD1 NM_024501 -1.197217085 3.035488667 1.838271582 0.006830781 3.550237567 0.000527228
MSPI0406S00673145 LRFN5 NM_152447 -1.063466587 1.555449914 0.491983327 0.00689953 3.545791028 0.000535441
MSPI0406S00570288 CDCA5 /// ZFPL1 NM_080668 /// NM_006782 -1.177887863 0.791012995 -0.386874868 0.007191977 3.529358412 0.000566848
MSPI0406S00440733 MAL2 NM_052886 -1.171046346 1.468564409 0.297518063 0.007541522 3.511357997 0.000603239
MSPI0406S00763103 CDH8 NM_001796 -1.081564475 2.339360745 1.25779627 0.007987733 3.484917251 0.000660698
MSPI0406S00888496 CD22 NM_001771 -1.059782445 1.814702752 0.754920307 0.008109689 3.478176806 0.000676148
MSPI0406S00287362 PCDHB18 /// PCDHB19P NR_001281 /// NR_001282 -1.102127148 2.036905405 0.934778257 0.008470457 3.459081321 0.000721781
MSPI0406S00686729 KCNK13 NM_022054 -1.25250565 1.153853057 -0.098652593 0.008502928 3.456974298 0.00072699
MSPI0406S00285467 PKD2L2 NM_014386 -1.134163505 0.430621173 -0.703542332 0.008542529 3.455344375 0.000731044
MSPI0406S00917391 GZF1 NM_022482 -1.223950429 1.53551318 0.311562751 0.008663837 3.449068016 0.000746851
MSPI0406S00012744 PDPN NM_006474 /// NM_198389 /// NM_001006624 /// NM_001006625 -1.000615791 1.726043918 0.725428127 0.009234918 3.419784525 0.000824939
MSPI0406S00755489 VKORC1 NM_024006 /// NM_206824 -1.103833089 3.366406486 2.262573397 0.01025031 3.377280395 0.000951996
MSPI0406S00317209 DAXX NM_001141969 /// NM_001141970 /// NM_001350 /// NR_024517 -1.402130715 2.481387118 1.079256403 0.010250815 3.377063588 0.000952689
MSPI0406S00303987 FOXQ1 NM_033260 -1.006578067 3.114135149 2.107557082 0.010354183 3.372214899 0.000968305
MSPI0406S00007735 TNFRSF9 NM_001561 -1.107580455 1.570673138 0.463092683 0.010512612 3.365062608 0.000991778
MSPI0406S00235316 MRPL1 NM_020236 -1.159076442 1.390476633 0.231400191 0.014514904 3.232229705 0.001537079
MSPI0406S00653171 TRIM13 NM_001007278 /// NM_005798 /// NM_052811 /// NM_213590 -1.100855042 -0.486611139 -1.587466181 0.014524224 3.231578383 0.001540336
MSPI0406S00897752 -1.021661888 1.966913783 0.945251895 0.014540079 3.230789421 0.00154429
MSPI0406S00067182 UCHL5 /// TROVE2 NM_015984 /// NM_001042370 /// NM_001042369 /// NM_004600 -1.247262702 1.342423914 0.095161212 0.015726591 3.199039272 0.001711483
MSPI0406S00444070 EFR3A NM_015137 -1.025891502 2.611151002 1.5852595 0.01793206 3.138635191 0.002076927
MSPI0406S00056455 SLC39A1 /// CREB3L4 NM_014437 /// NM_130898 -1.331806694 1.795829563 0.464022869 0.019034675 3.112733835 0.002254781
MSPI0406S00140608 WIPF1 NM_003387 -1.181961804 1.465105665 0.283143861 0.020241647 3.083683711 0.002470982
MSPI0406S00813718 XYLT2 NM_022167 -1.244356059 1.683256753 0.438900694 0.021903057 3.047696359 0.002765378
MSPI0406S00363814 CPVL NM_019029 /// NM_031311 -1.161411913 0.729969303 -0.43144261 0.022240916 3.03980643 0.002834107
MSPI0406S00687378 -1.162034601 2.149502651 0.98746805 0.033658484 2.846535952 0.005096452
MSPI0406S00560646 RAG2 /// C11orf74 NM_000536 /// NM_138787 -1.112634296 1.09940993 -0.013224366 0.034424991 2.836140001 0.005255693
MSPI0406S00287335 PCDHB7 /// PCDHB8 NM_018940 /// NM_019120 -1.118567444 1.863435711 0.744868267 0.036776222 2.803922009 0.005778484
MSPI0406S00954845 BCL2L13 NM_015367 -1.093753458 -0.161553299 -1.255306757 0.03886245 2.778961841 0.006215623
MSPI0406S00139486 METTL8 /// DCAF17 NM_024770 /// NM_001164821 /// NM_025000 /// NR_028482 -1.025882877 2.010109854 0.984226977 0.046113335 2.694260219 0.007932663
MSPI0406S00342135 LRP11 NM_032832 -1.03319107 0.522909834 -0.510281236 0.047776126 2.6755102 0.008366554
MSPI0406S00434315 CHMP4C NM_152284 -1.039745032 1.715468987 0.675723955 0.072204547 2.451846929 0.015464543