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Stan Pounds, PhD

Member, St. Jude Faculty
Director, Division of Biostatistics for Computational Biology and Bioinformatics
Department of Biostatistics
St. Jude Children's Research Hospital

See Faculty Bio

Supplemental Data

Genomic analysis reveals few genetic alterations in pediatric acute myeloid leukemia.
Radtke I, Mullighan CG, Ishii M, Su X, Cheng J, Ma J, Ganti R, Cai Z, Goorha S, Pounds SB, Cao X, Obert C, Armstrong J, Zhang J, Song G, Ribeiro RC, Rubnitz JE, Raimondi SC, Shurtleff SA, Downing JR.
Proc Natl Acad Sci USA 2009 Aug 4;106(31):12944-9.*

*See also: AML-SNP1

Assumption Adequacy Averaging as a Concept for Developing More Robust Methods for Differential Gene Expression Analysis
Stan Pounds and Shesh N. Rai
Comput Stat Data Anal. 2009 Mar 15;53(5):1604-1612.

Reference Alignment of SNP Microarray Signals for Copy Number Analysis of Tumors.
Pounds S, Cheng C, Mullighan C, Raimondi SC, Shurtleff S, Downing JR.
Bioinformatics 2009 Feb 1;25(3):315-21. Epub 2008 Dec 3.

Computational Enhancement of a Shrinkage-Based ANOVA F-test Proposed for Differential Gene Expression Analysis.
Stan Pounds
2007 Biostatistics

Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia.
Mullighan CG, Goorha S, Radtke I, Miller CB, Coustan-Smith E, Dalton JD, Girtman K, Mathew S, Ma J, Pounds SB, Su X, Pui C-H, Relling MV, Evans WE, Shurtleff SA, Downing JR.
Nature 2007;446:758-64, 2007.*

*See also: ALL-SNP1

Genes regulating B cell development are mutated in acute lymphoid leukaemia
Charles G. Mullighan, Salil Goorha, Ina Radtke, Christopher B. Miller, Elaine Coustan-Smith, James D. Dalton, Kevin Girtman, Susan Mathew, Jing Ma, Stanley B. Pounds, Xiaoping Su, Ching-Hon Pui, Mary V. Relling, William E. Evans, Sheila A. Shurtleff, James R. Downing
Nature. 2007 Apr 12;446(7137):758-64.

Gene expression profiling of childhood adrenocortical tumors.
West AN, Neale GA, Pounds S, Figueredo BC, Rodriguez Galindo C, Pianovski MA, Oliveira Filho AG, Malkin D, Lalli E, Ribeiro R, Zambetti GP
Cancer Res. 2007 Jan 15;67(2):600-8.

Robust Estimation of the False Discovery Rate.
Stan Pounds, Cheng Cheng
Bioinformatics. 2006 Aug 15;22(16):1979-87. Epub 2006 Jun 15.

Estimation and Control of Multiple Testing Error Rates for the Analysis of Microarray Data.
Stan Pounds
Brief Bioinform. 2006 Mar;7(1):25-36. Review

Sample Size Determination for the False Discovery Rate.
Stan Pounds, Cheng Cheng
Bioinformatics. 2005 Dec 1;21(23):4263-71. Epub 2005 Oct 4. Erratum in: Bioinformatics. 2009 Mar 1;25(5):698-9.

Statistical Development and Evaluation of Gene Expression Data Filters.
Stan Pounds, Cheng Cheng
J Comput Biol. 2005 May;12(4):482-95. Review.

Gene Expression Profiling of Pediatric Acute Myelogenous Leukemia.
Mary E. Ross, Rami Mahfouz, Mihaela Onciu, Hsi-Che Liu, Xiadong Zhou, Guangchun Song, Shelia A. Shurtleff, Stanley Pounds, Cheng Cheng, Jing Ma, Raul C. Riberiro, Jeffrey E. Rubnitz, Kevin Girtman, W. Kent Williams, Susana C. Raimondi, Der-Chemg Liang, Lee-Yung Shih, Ching-Hon Pui & James R. Downing
Blood. 2004 Dec 1;104(12):3679-87.

Improving False Discovery Rate Estimation.
Stan Pounds, Cheng Cheng
Bioinformatics. 2004 Jul 22;20(11):1737-45. Epub 2004 Feb 26.

Estimating the Occurrence of False Positives and False Negatives in Microarray Studies by Approximating and Partitioning the Empirical Distribution of p-values.
Stan Pounds, Steve Morris
Bioinformatics. 2003 Jul 1;19(10):1236-42.