APPLICATIONS / DATABASESSUPPLEMENTAL DATAFACULTYMIRROR SITESCOLLABORATIVE PROJECTSDEPARTMENTS

 


Section III
continued...



Table S9.
Top 100 chi-square probe sets selected for BCR-ABL in parallel format

 

U133 probe set

Gene description

Symbol

Location

GenBank Reference

Unigene
Reference

Chi-square value

BCR-ABL above/ below
mean

Fold change

1

201876_at

paraoxonase 2

PON2

7q21.3

NM_000305.1

Hs.169857

70.8

Above

18.6

2

210830_s_at

paraoxonase 2

PON2

7q21.3

AF001602.1

Hs.169857

70.8

Above

23.4

3

209365_s_at

extracellular matrix protein 1

ECM1

1q21

U65932.1

Hs.81071

70.4

Above

6.0

4

209238_at

syntaxin 3A

STX3A

11q12.3

BE966922

Hs.82240

66.5

Above

2.2

5

212242_at

tubulin, alpha 1 (testis specific)

TUBA1

2q36.2

AL565074

Hs.75318

64.9

Above

3.2

6

222488_s_at

dynactin 4 (p62)

DCTN4

5q31-q32

BE218028

Hs.180952

63.3

Above

3.6

7

222762_x_at

LIM domains containing 1

LIMD1

3p21.3

AU144259

Hs.48469

63.3

Above

2.6

8

201310_s_at

P311 protein.  Similar to gastrin/cholecystokinin type B receptor

P311

5q21.3

NM_004772.1

Hs.142827

61.3

Below

2.2

9

215617_at

Homo sapiens cDNA FLJ11754 fis, clone HEMBA1005588

   

AU145711

Hs.301006

61.3

Above

15.8

10

200951_s_at

cyclin D2

CCND2

12p13

NM_001759.1

Hs.75586

60.9

Above

12.6

11

204430_s_at

solute carrier family 2 (facilitated glucose/fructose transporter), member 5

SLC2A5

1p36.2

NM_003039.1

Hs.33084

60.9

Above

5.1

12

200953_s_at

cyclin D2

CCND2

12p13

NM_001759.1

Hs.75586

60.7

Above

3.6

13

222154_s_at

DKFZP564A2416 protein

DKFZP564A2416

2q33.1

AK002064.1

Hs.5297

60.3

Above

12.3

14

204429_s_at

solute carrier family 2 (facilitated glucose/fructose transporter), member 5

SLC2A5

1p36.2

BE560461

Hs.33084

57.1

Above

5.0

15

219315_s_at

hypothetical protein FLJ20898

FLJ20898

16p13.12

NM_024600.1

Hs.25549

57.1

Above

5.4

16

241812_at

Homo sapiens cDNA FLJ35598 fis, clone SPLEN2008317

   

AV648669

Hs.199438

55.9

Above

5.2

17

201906_s_at

HYA22 protein

HYA22

3p21.3

NM_005808.1

Hs.147189

54.0

Above

43.1

18

202947_s_at

glycophorin C (Gerbich blood group)

GYPC

2q14-q21

NM_002101.2

Hs.81994

54.0

Above

3.1

19

242579_at

ESTs

   

AA935461

Hs.161712

54.0

Above

10.1

20

212203_x_at

interferon induced transmembrane protein 3 (1-8U)

IFITM3

11

BF338947

Hs.182241

52.0

Above

2.3

21

240173_at

ESTs

   

AI732969

Hs.126245

52.0

Above

10.2

22

212298_at

neuropilin 1

NRP1

10p12

BE620457

Hs.69285

51.8

Above

13.7

23

212592_at

immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides

IGJ

4q21

AV733266

Hs.76325

51.8

Above

8.0

24

222868_s_at

interleukin 18 binding protein

IL18BP

11q13

AI521549

Hs.325978

51.6

Above

7.1

25

235988_at

ESTs

   

AA746038

Hs.125343

51.6

Above

15.6

26

239273_s_at

matrix metalloproteinase 28

MMP28

17q11-q21.1

AI927208

Hs.231958

51.6

Above

89.8

27

219938_s_at

proline-serine-threonine phosphatase interacting protein 2

PSTPIP2

18q12

NM_024430.1

Hs.69149

51.6

Above

5.2

28

207196_s_at

Nef-associated factor 1

NAF1

5q32-q33.1

NM_006058.1

Hs.109281

47.2

Above

1.4

29

227533_at

ESTs

   

AA732944

Hs.5415

47.1

Below

2.7

30

217110_s_at

mucin 4

MUC4

3q29

AJ242547.1

Hs.198267

45.0

Above

47.2

31

220684_at

T-box 21

TBX21

17q21.2

NM_013351.1

Hs.272409

45.0

Above

3.3

32

227182_at

hypothetical protein MGC26847

MGC26847

9q22.2

AW966474

Hs.88417

45.0

Above

7.2

33

223075_s_at

hypothetical protein FLJ12783

FLJ12783

9q34.13-q34.3

AL136566.1

Hs.4944

45.0

Above

3.9

34

202748_at

guanylate binding protein 2, interferon-inducible

GBP2

1p22.1

NM_004120.2

Hs.171862

44.5

Above

3.9

35

214657_s_at

multiple endocrine neoplasia I

MEN1

11q13

AU134977

Hs.240443

43.3

Above

2.3

36

202771_at

KIAA0233 gene product

KIAA0233

16q24.3

NM_014745.1

Hs.79077

43.3

Above

1.9

37

217967_s_at

chromosome 1 open reading frame 24

C1orf24

1q25

AF288391.1

Hs.48778

43.3

Above

3.3

38

220024_s_at

Periaxin

PRX

19q13.13-q13.2

NM_020956.1

Hs.205457

43.3

Above

8.1

39

203217_s_at

sialyltransferase 9

SIAT9

2p11.2

NM_003896.1

Hs.225939

43.2

Above

1.8

40

238689_at

Homo sapiens cDNA FLJ30646 fis, clone CTONG2004716, weakly similar to Rattus norvegicus mRNA for seven transmembrane receptor

   

BG426455

Hs.256897

43.2

Above

10.8

41

200665_s_at

secreted protein, acidic, cysteine-rich (osteonectin)

SPARC

5q31.3-q32

NM_003118.1

Hs.111779

42.9

Above

10.5

42

200864_s_at

RAB11A, member RAS oncogene family

RAB11A

15q21.3-q22.31

NM_004663.1

Hs.75618

42.9

Above

1.4

43

213075_at

Homo sapiens, clone IMAGE:3140802, mRNA

   

AL050002.1

Hs.94795

42.9

Above

26.4

44

236489_at

ESTs

   

AI282097

Hs.72307

42.9

Above

16.6

45

48106_at

hypothetical protein FLJ20489

FLJ20489

12p11.1

H14241

Hs.306989

42.6

Above

2.8

46

203005_at

lymphotoxin beta receptor (TNFR superfamily, member 3)

LTBR

12p13

NM_002342.1

Hs.1116

42.6

Above

9.9

47

205467_at

caspase 10, apoptosis-related cysteine protease

CASP10

2q33-q34

NM_001230.1

Hs.5353

42.6

Above

3.6

48

220454_s_at

semaphorin 6A

SEMA6A

5q23.1

NM_020796.1

Hs.263395

42.6

Above

3.3

49

228696_at

prostein protein

LOC85414

1q31.1

AA631143

Hs.278695

42.6

Above

95.9

50

235306_at

hypothetical protein DKFZp667I133

DKFZp667I133

7q35

AI611648

Hs.95834

42.6

Above

3.5

51

239272_at

matrix metalloproteinase 28

MMP28

17q11-q21.1

AI927208

Hs.231958

42.6

Above

14.2

52

242572_at

ESTs

   

BF435438

Hs.269924

42.6

Above

4.9

53

242677_at

ESTs

   

AI088099

Hs.173548

42.6

Above

469.2

54

244597_at

ESTs

   

AA701247

Hs.269548

42.6

Above

11.7

55

218013_x_at

dynactin 4 (p62)

DCTN4

5q31-q32

NM_016221.1

Hs.180952

41.5

Above

3.6

56

218084_x_at

FXYD domain containing ion transport regulator 5

FXYD5

19q12-q13.1

NM_014164.2

Hs.333418

41.5

Above

1.5

57

221790_s_at

LDL receptor adaptor protein

ARH

1p36-p35

AL545035

Hs.184482

41.5

Above

3.5

58

201028_s_at

antigen identified by monoclonal antibodies 12E7, F21 and O13

MIC2

Xp22.32

U82164.1

Hs.177543

41.4

Above

2.6

59

210105_s_at

FYN oncogene related to SRC, FGR, YES

FYN

6q21

M14333.1

Hs.169370

40.7

Above

1.8

60

201445_at

calponin 3, acidic

CNN3

1p22-p21

NM_001839.1

Hs.194662

39.8

Above

10.7

61

229139_at

Homo sapiens, clone IMAGE:4245141, mRNA

   

AI202201

Hs.293836

39.5

Above

10.7

62

229975_at

ESTs

   

AI826437

Hs.72472

39.0

Above

9.0

63

205055_at

integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)

ITGAE

17p13

NM_002208.3

Hs.851

38.8

Below

2.1

64

226190_at

glucose phosphate isomerase

GPI

19q13.1

BG029496

Hs.279789

38.8

Above

3.5

65

209732_at

C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 2 (activation-induced)

CLECSF2

12p13-p12

BC005254.1

Hs.85201

37.1

Above

2.3

66

210487_at

deoxynucleotidyltransferase, terminal

DNTT

10q23-q24

M11722.1

Hs.272537

37.1

Above

2.0

67

203508_at

tumor necrosis factor receptor superfamily, member 1B

TNFRSF1B

1p36.3-p36.2

NM_001066.1

Hs.256278

36.4

Above

2.6

68

209321_s_at

adenylate cyclase 3

ADCY3

2p24-p22

AF033861.1

Hs.8402

36.4

Above

2.0

69

212552_at

hippocalcin-like 1

HPCAL1

2p25.1

BE617588

Hs.3618

36.4

Above

2.0

70

219871_at

hypothetical protein FLJ13197

FLJ13197

4p14

NM_024614.1

Hs.29725

36.4

Above

14.4

71

203159_at

glutaminase

GLS

2q32-q34