APPLICATIONS / DATABASESSUPPLEMENTAL DATAFACULTYMIRROR SITESCOLLABORATIVE PROJECTSDEPARTMENTS

 


Section III
continued...



Table S13.
Top 100 chi-square probe sets selected for T-ALL in parallel format

 

U133 probe set

Gene description

Symbol

Location

GenBank Reference

Unigene Reference

Chi-square value

T-ALL Above/below mean

Fold change

1

201137_s_at

major histocompatibility complex, class II, DP beta 1

HLA-DPB1

6p21.3

NM_002121.1

Hs.814

100.0

Below

24.2

2

202113_s_at

sorting nexin 2

SNX2

5q23

AF043453.1

Hs.11183

100.0

Below

4.2

3

202114_at

sorting nexin 2

SNX2

5q23

NM_003100.1

Hs.11183

100.0

Below

4.7

4

203675_at

nucleobindin 2

NUCB2

11p15.1-p14

NM_005013.1

Hs.3164

100.0

Above

3.7

5

204670_x_at

major histocompatibility complex, class II, DR beta 3

HLA-DRB3

6p21.3

NM_002125.1

Hs.308026

100.0

Below

15.3

6

205297_s_at

CD79B antigen (immunoglobulin-associated beta)

CD79B

17q23

NM_000626.1

Hs.89575

100.0

Below

21.8

7

205456_at

CD3E antigen, epsilon polypeptide (TiT3 complex)

CD3E

11q23

NM_000733.1

Hs.3003

100.0

Above

20.8

8

206398_s_at

CD19 antigen

CD19

16p11.2

NM_001770.1

Hs.96023

100.0

Below

5693.6

9

208306_x_at

major histocompatibility complex, class II, DR beta 4

HLA-DRB4

6p21.3

NM_021983.2

Hs.318720

100.0

Below

9.8

10

208894_at

major histocompatibility complex, class II, DR alpha

HLA-DRA

6p21.3

M60334.1

Hs.76807

100.0

Below

27.5

11

209312_x_at

major histocompatibility complex, class II, DR beta 1

HLA-DRB1

6p21.3

U65585.1

Hs.375570

100.0

Below

14.6

12

209619_at

CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)

CD74

5q32

K01144.1

Hs.84298

100.0

Below

18.9

13

210116_at

SH2 domain protein 1A, Duncan's disease (lymphoproliferative syndrome)

SH2D1A

Xq25-q26

AF072930.1

Hs.151544

100.0

Above

159.0

14

210982_s_at

major histocompatibility complex, class II, DR alpha

HLA-DRA

6p21.3

M60333.1

Hs.76807

100.0

Below

32.5

15

211990_at

major histocompatibility complex, class II, DP alpha 1

HLA-DPA1

6p21.3

M27487.1

Hs.914

100.0

Below

29.4

16

211991_s_at

major histocompatibility complex, class II, DP alpha 1

HLA-DPA1

6p21.3

M27487.1

Hs.914

100.0

Below

35.9

17

213539_at

CD3D antigen, delta polypeptide (TiT3 complex)

CD3D

11q23

NM_000732.1

Hs.95327

100.0

Above

37.0

18

214049_x_at

CD7 antigen (p41)

CD7

17q25.2-q25.3

AI829961

Hs.36972

100.0

Above

327.3

19

214551_s_at

CD7 antigen (p41)

CD7

17q25.2-q25.3

NM_006137.2

Hs.36972

100.0

Above

241.8

20

217147_s_at

T-cell receptor interacting molecule

TRIM

3q13

AJ240085.1

Hs.138701

100.0

Above

43.6

21

217478_s_at

MHC, class IIa, HLA-DMA

HLA-DMA

 

X76775

 

100.0

Below

14.1

22

221969_at

paired box gene 5 (B-cell lineage specific activator protein)

PAX5

9p13

BF510692

Hs.22030

100.0

Below

3922.0

23

227646_at

early B-cell factor

EBF

5q34

BG435302

Hs.32425

100.0

Below

79.2

24

229487_at

Homo sapiens cDNA FLJ39389

   

W73890

Hs.120785

100.0

Below

7685.7

25

229838_at

Homo sapiens cDNA FLJ39156

   

AI377271

Hs.376140

100.0

Above

13.4

26

232204_at

early B-cell factor

EBF

5q34

AF208502.1

Hs.32425

100.0

Below

7112.4

27

266_s_at

CD24 antigen (small cell lung carcinoma cluster 4 antigen)

CD24

6q21

L33930

Hs.286124

91.3

Below

135.5

28

39318_at

T-cell leukemia/lymphoma 1A

TCL1A

14q32.1

X82240

Hs.2484

91.3

Below

18114.7

29

203965_at

ubiquitin specific protease 20

USP20

9q34.12-q34.13

NM_006676.1

Hs.5452

91.3

Above

9.6

30

204891_s_at

lymphocyte-specific protein tyrosine kinase

LCK

1p34.3

NM_005356.1

Hs.1765

91.3

Above

14.3

31

205255_x_at

transcription factor 7 (T-cell specific, HMG-box)

TCF7

5q31.1

NM_003202.1

Hs.169294

91.3

Above

8.5

32

207655_s_at

B-cell linker

BLNK

10q23.2-q23.33

NM_013314.1

Hs.167746

91.3

Below

133.1

33

209771_x_at

CD24 antigen (small cell lung carcinoma cluster 4 antigen)

CD24

6q21

AA761181

Hs.286124

91.3

Below

51.5

34

211796_s_at

T cell receptor beta locus

TRB

7q34

AF043179.1

Hs.303157

91.3

Above

21.5

35

213792_s_at

insulin receptor

INSR

19p13.3-p13.2

AA485908

Hs.89695

91.3

Below

8.6

36

215193_x_at

major histocompatibility complex, class II, DR beta 3

HLA-DRB3

6p21.3

AJ297586.1

Hs.308026

91.3

Below

16.7

37

216379_x_at

KIAA1919 protein

KIAA1919

6q22.1

AK000168.1

Hs.381004

91.3

Below

56.0

38

219191_s_at

bridging integrator 2

BIN2

12q13

NM_016293.1

Hs.14770

91.3

Above

264.1

39

219563_at

hypothetical protein FLJ21276

FLJ21276

14q32.2

NM_024633.1

Hs.41502

91.3

Below

5.8

40

219724_s_at

KIAA0748 gene product

KIAA0748

12q12

NM_014796.1

Hs.33187

91.3

Above

11.4

41

221750_at

3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)

HMGCS1

5p14-p13

BG035985

Hs.77910

91.3

Above

3.5

42

226157_at

Homo sapiens cDNA FLJ39131

   

AI569747

Hs.379018

91.3

Above

4.6

43

226496_at

hypothetical protein FLJ22611

FLJ22611

9p11.1

BG291039

Hs.27774

91.3

Below

7.7

44

204214_s_at

RAB32, member RAS oncogene family

RAB32

6q24.3

NM_006834.1

Hs.32217

90.6

Above

137.0

45

204777_s_at

mal, T-cell differentiation protein

MAL

2cen-q13

NM_002371.2

Hs.80395

90.6

Above

95.2

46

204890_s_at

lymphocyte-specific protein tyrosine kinase

LCK

1p34.3

U07236.1

Hs.1765

90.6

Above

19.4

47

205049_s_at

CD79A antigen (immunoglobulin-associated alpha)

CD79A

19q13.2

NM_001783.1

Hs.79630

90.6

Below

11.6

48

205254_x_at

transcription factor 7 (T-cell specific, HMG-box)

TCF7

5q31.1

AW027359

Hs.169294

90.6

Above

377.1

49

205504_at

Bruton agammaglobulinemia tyrosine kinase

BTK

Xq21.33-q22

NM_000061.1

Hs.159494

90.6

Below

7.3

50

210915_x_at

T cell receptor beta locus

TRB

7q34

M15564.1

Hs.303157

90.6

Above

16.2

51

211211_x_at

SH2 domain protein 1A, Duncan's disease (lymphoproliferative syndrome)

SH2D1A

Xq25-q26

AF100542.1

Hs.151544

90.6

Above

2103.7

52

213830_at

T cell receptor delta locus

TRD

14q11.2

AW007751

Hs.2014

90.6

Above

7379.7

53

216191_s_at

T cell receptor delta locus

TRD

14q11.2

X72501.1

Hs.2014

90.6

Above

253.1

54

217143_s_at

T cell receptor delta locus

TRD

14q11.2

X06557.1

Hs.2014

90.6

Above

150.1

55

219528_s_at

B-cell CLL/lymphoma 11B (zinc finger protein)

BCL11B

14q32.31-q32.32

NM_022898.1

Hs.57987

90.6

Above

11.9

56

220418_at

ubiquitin associated and SH3 domain containing, A

UBASH3A

21q22.3

NM_018961.1

Hs.183924

90.6

Above

766.4

57

222895_s_at

B-cell CLL/lymphoma 11B (zinc finger protein)

BCL11B

14q32.31-q32.32

AA918317

Hs.57987

90.6

Above

12.1

58

223553_s_at

hypothetical protein FLJ22570

FLJ22570

5q35.3

BC004564.1

Hs.122559

90.6

Below

7.0

59

225090_at

HRD1 protein

HRD1

11q12

AA844682

Hs.334819

90.6

Below

3.8

60

226459_at

Homo sapiens gastric cancer-related protein GCYS-20 (gcys-20) mRNA, complete cds

   

AW575754

Hs.86437

90.6

Below

11.9

61

228314_at

Homo sapiens cDNA FLJ37485

   

BE877357

Hs.24181

90.6

Below

5.1

62

201384_s_at

membrane component, chromosome 17, surface marker 2 (ovarian carcinoma antigen CA125)

M17S2

17q21.1

NM_005899.1

Hs.277721

83.8

Above

3.3

63

202540_s_at

3-hydroxy-3-methylglutaryl-Coenzyme A reductase

HMGCR

5q13.3-q14

NM_000859.1

Hs.11899

83.8

Above

4.6

64

203198_at

cyclin-dependent kinase 9 (CDC2-related kinase)

CDK9

9q34.1

NM_001261.1

Hs.150423

83.8

Below

5.2

65

203932_at

major histocompatibility complex, class II, DM beta

HLA-DMB

6p21.3

NM_002118.1

Hs.1162

83.8

Below

8.2

66

204613_at

phospholipase C, gamma 2 (phosphatidylinositol-specific)

PLCG2

16q24.1

NM_002661.1

Hs.75648

83.8

Below

4.0

67

205267_at

POU domain, class 2, associating factor 1

POU2AF1

11q23.1

NM_006235.1

Hs.2407

83.8

Below

11.7

68

208650_s_at

CD24 antigen (small cell lung carcinoma cluster 4 antigen)

CD24

6q21

BG327863

Hs.286124

83.8

Below

110.8

69

208651_x_at

CD24 antigen (small cell lung carcinoma cluster 4 antigen)

CD24

6q21

M58664.1

Hs.286124

83.8

Below

49.3

70

209995_s_at

T-cell leukemia/lymphoma 1A

TCL1A

14q32.1

BC003574.1

Hs.2484

83.8

Below

20166.2

71

210038_at

protein kinase C, theta

PRKCQ

10p15

AL137145

Hs.211593

83.8

Above

12.7

72

211126_s_at

cysteine and glycine-rich protein 2

CSRP2

12q21.1

U46006.1

Hs.10526

83.8

Below

16.8

73

220068_at

pre-B lymphocyte gene 3

VPREB3

22q11.23

NM_013378.1

Hs.136713

83.8

Below

6559.8

74

226245_at

Homo sapiens mRNA; cDNA DKFZp451C132

   

U55984

Hs.356531

83.8

Above

9.1

75

202615_at

Homo sapiens mRNA; cDNA DKFZp686D0521

   

BF222895

Hs.356786

82.2

Above

3.1

76

224861_at

Homo sapiens cDNA FLJ31057

   

BF477658

Hs.296261

82.2

Above

3.5

77

201194_at

selenoprotein W, 1

SEPW1

19q13.3

NM_003009.1

Hs.14231

82.0

Above

4.0

78

201349_at

solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulatory factor 1

SLC9A3R1

17q25.2

NM_004252.1

Hs.184276

82.0

Above

2.7

79

202539_s_at

3-hydroxy-3-methylglutaryl-Coenzyme A reductase

HMGCR

5q13.3-q14

AL518627

Hs.11899

82.0

Above

3.5