APPLICATIONS / DATABASESSUPPLEMENTAL DATAFACULTYMIRROR SITESCOLLABORATIVE PROJECTSDEPARTMENTS

 


Section III
continued...



Table S11.
Top 100 chi-square probe sets selected for Hyperdiploid >50  in parallel format

 

U133
probe set

Gene description

Symbol

Location

GenBank Reference

Unigene Reference

Chi-square value

HD>50 above/ below mean

Fold change

1

216071_x_at

trinucleotide repeat containing 11

TNRC11

Xq13

AF132033

Hs.211607

91.8

Above

1.8

2

218757_s_at

similar to yeast Upf3, variant B

UPF3B

Xq25-q26

NM_023010.1

Hs.103832

91.3

Above

2.3

3

208861_s_at

alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae)

ATRX

Xq13.1-q21.1

U72937.2

Hs.96264

91.3

Above

1.7

4

200980_s_at

pyruvate dehydrogenase (lipoamide) alpha 1

PDHA1

Xp22.2-p22.1

NM_000284.1

Hs.1023

83.1

Above

1.7

5

202371_at

hypothetical protein FLJ21174

FLJ21174

Xq22.1

NM_024863.1

Hs.194329

83.1

Above

3.6

6

205324_s_at

FtsJ homolog 1 (E. coli)

FTSJ1

Xp11.23

NM_012280.1

Hs.23170

83.1

Above

2.2

7

201899_s_at

ubiquitin-conjugating enzyme E2A (RAD6 homolog)

UBE2A

Xq24-q25

NM_003336.1

Hs.80612

82.7

Above

1.8

8

212846_at

KIAA0179 protein

KIAA0179

21q22.3

D80001.1

Hs.152629

82.7

Above

2.0

9

218499_at

Mst3 and SOK1-related kinase

MST4

Xq26.1

NM_016542.1

Hs.23643

82.7

Above

2.5

10

221689_s_at

Down syndrome critical region gene 5

DSCR5

21q22.2

AB035745.1

Hs.66493

82.7

Above

2.2

11

219038_at

hypothetical protein FLJ11565

FLJ11565

Xq22.2

NM_024657.1

Hs.61763

78.8

Above

6.8

12

208598_s_at

Upstream regulatory element binding protein 1

UREB1

Xp11.22

NM_005703.2

 

78.4

Above

1.6

13

201100_s_at

ubiquitin specific protease 9, X chromosome (fat facets-like Drosophila)

USP9X

Xp11.4

NM_004652.2

Hs.77578

76.1

Above

1.7

14

201132_at

heterogeneous nuclear ribonucleoprotein H2 (H')

HNRPH2

Xq22

NM_019597.1

Hs.278857

74.6

Above

2.0

15

201898_s_at

ubiquitin-conjugating enzyme E2A (RAD6 homolog)

UBE2A

Xq24-q25

AI126625

Hs.80612

74.6

Above

1.6

16

213289_at

Homo sapiens cDNA FLJ39590 fis, clone SKNMC1000079

   

BE221922

Hs.356269

74.6

Above

3.8

17

219485_s_at

proteasome (prosome, macropain) 26S subunit, non-ATPase, 10

PSMD10

Xq22.3

NM_002814.1

Hs.7756

74.6

Above

2.4

18

218878_s_at

sirtuin silent mating type information regulation 2 homolog 1 (S. cerevisiae)

SIRT1

10q22.2

NM_012238.3

Hs.31176

74.4

Above

1.4

19

228005_at

ESTs, Weakly similar to T45117 hU1-70K protein (286 AA) [imported] - human (fragment) [H.sapiens]

   

BE677308

Hs.96716

74.4

Above

3.8

20

201136_at

proteolipid protein 2 (colonic epithelium-enriched)

PLP2

Xp11.23

NM_002668.1

Hs.77422

73.0

Above

3.4

21

202214_s_at

cullin 4B

CUL4B

Xq23

NM_003588.1

Hs.155976

73.0

Above

1.9

22

242794_at

ESTs

   

AI569476

Hs.177135

70.0

Above

3.2

23

211342_x_at

trinucleotide repeat containing 11 (THR-associated protein, 230 kDa subunit)

TNRC11

Xq13

BC004354.1

 

68.1

Above

1.8

24

212419_at

Homo sapiens, similar to Y43E12A.2.p, clone MGC:33537 IMAGE:4821347, mRNA, complete cds

   

AL049949.1

Hs.28264

68.1

Above

13.0

25

207785_s_at

H-2K binding factor-2

LOC51580

9

NM_015874.1

Hs.347340

67.8

Above

1.8

26

212460_at

hypothetical protein MGC24447

MGC24447

14

BE738425

Hs.353161

67.8

Above

2.2

27

203745_at

holocytochrome c synthase (cytochrome c heme-lyase)

HCCS

Xp22.3

AI801013

Hs.211571

67.8

Above

2.0

28

209565_at

zinc finger protein 183 (RING finger, C3HC4 type)

ZNF183

Xq25-q26

BC000832.1

Hs.64794

67.8

Above

2.2

29

201099_at

ubiquitin specific protease 9, X chromosome (fat facets-like Drosophila)

USP9X

Xp11.4

AA824386

Hs.77578

66.3

Above

1.6

30

203974_at

DNA segment, numerous copies, expressed probes (GS1 gene)

DXF68S1E

Xp22.32

NM_012080.1

Hs.78991

66.3

Above

4.0

31

215884_s_at

ubiquilin 2

UBQLN2

Xp11.23-p11.1

AK001029.1

Hs.4552

66.2

Above

1.9

32

200642_at

superoxide dismutase 1, soluble

SOD1

21q22.11

NM_000454.1

Hs.75428

64.7

Above

2.3

33

200738_s_at

phosphoglycerate kinase 1

PGK1

Xq13

NM_000291.1

Hs.78771

64.7

Above

1.8

34

201312_s_at

SH3 domain binding glutamic acid-rich protein like

SH3BGRL

Xq13.3

NM_003022.1

Hs.14368

64.7

Above

1.6

35

226875_at

hypothetical protein FLJ32122

FLJ32122

Xq24

AI742838

Hs.107513

64.6

Above

2.3

36

228057_at

similar to Smhs1 protein

LOC115265

4q22.1

AA528140

Hs.107515

63.7

Above

6.7

37

232974_at

Homo sapiens cDNA FLJ12417 fis, clone MAMMA1003039

   

AU148256

Hs.226469

63.7

Above

3.1

38

232034_at

Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763)

   

AL117607.1

Hs.175563

62.1

Above

6.1

39

200944_s_at

high-mobility group nucleosome binding domain 1

HMGN1

21q22.2

NM_004965.1

Hs.251064

61.9

Above

1.7

40

201443_s_at

ATPase, H+ transporting, lysosomal interacting protein 2

ATP6IP2

Xq21

AF248966.1

Hs.183434

61.9

Above

1.9

41

226333_at

interleukin 6 receptor

IL6R

1q21

AV700030

Hs.193400

61.9

Above

8.7

42

203585_at

zinc finger protein 185 (LIM domain)

ZNF185

Xq28

NM_007150.1

Hs.16622

60.9

Above

10.7

43

206846_s_at

histone deacetylase 6

HDAC6

Xp11.23

NM_006044.2

Hs.6764

60.1

Above

1.5

44

216095_x_at

myotubularin related protein 1

MTMR1

Xq28

AF057354.1

Hs.372428

60.1

Above

1.8

45

226039_at

Mannosyl (alpha-1,3)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase

MGAT4A

2q11.2

AW006441

Hs.24210

60.1

Above

3.0

46

227210_at

Homo sapiens cDNA FLJ32568 fis, clone SPLEN2000098

   

T65020

Hs.12699

60.1

Above

3.6

47

236172_at

ESTs

   

AW206817

Hs.158186

60.1

Above

2.4

48

214735_at

phosphoinositide-binding protein PIP3-E

PIP3-E

6q25.2

AW166711

Hs.185140

59.8

Above

6.4

49

206147_x_at

sex comb on midleg-like 2 (Drosophila)

SCML2

Xp22

NM_006089.1

Hs.171558

59.6

Above

2.2

50

209022_at

stromal antigen 2

STAG2

Xq25

AK026678.1

Hs.8217

59.6

Above

1.7

51

213282_at

Homo sapiens cDNA FLJ39590 fis, clone SKNMC1000079

   

BE221922

Hs.356269

59.6

Above

2.2

52

218582_at

hypothetical protein FLJ20445

FLJ20445

10q23.33

NM_017824.1

Hs.343748

59.6

Above

1.6

53

218694_at

ALEX1 protein

ALEX1

Xq21.33-q22.2

NM_016608.1

Hs.9728

59.6

Above

2.8

54

226785_at

Homo sapiens cDNA FLJ36516 fis, clone TRACH2001898

   

BF475862

Hs.88252

59.6

Above

1.9

55

200655_s_at

calmodulin 1 (phosphorylase kinase, delta)

CALM1

14q24-q31

NM_006888.1

Hs.177656

58.7

Above

1.7

56

210176_at

toll-like receptor 1

TLR1

4p14

AL050262.1

Hs.2474

58.2

Above

2.1

57

202711_at

ephrin-B1

EFNB1

Xq12

NM_004429.1

Hs.144700

58.2

Above

14.9

58

204446_s_at

arachidonate 5-lipoxygenase

ALOX5

10q11.2

NM_000698.1

Hs.89499

58.2

Above

4.2

59

219297_at

similar to rab11-binding protein

FLJ11116

Xq24

NM_019045.1

Hs.98510

58.2

Above

2.4

60

201923_at

peroxiredoxin 4

PRDX4

Xp22.13

NM_006406.1

Hs.83383

58.2

Above

1.9

61

212929_s_at

KIAA0592 protein

KIAA0592

10q11.21

W68158

Hs.13273

58.2

Above

5.0

62

204045_at

transcription elongation factor A (SII)-like 1

TCEAL1

Xq22.1

NM_004780.1

Hs.95243

56.8

Above

2.1

63

208117_s_at

hypothetical protein FLJ12525

FLJ12525

Xq12-q13

NM_031206.1

Hs.321618

56.8

Above

2.2

64

209620_s_at

ATP-binding cassette, sub-family B (MDR/TAP), member 7

ABCB7

Xq12-q13

AB005289.1

Hs.125856

56.8

Above

2.1

65

209679_s_at

hypothetical protein from clone 643

LOC57228

12q11

BC003379.1

Hs.206501

56.8

Above

5.6

66

217954_s_at

PHD finger protein 3

PHF3

 

NM_015153.1

Hs.78893

56.8

Above

1.5

67

218414_s_at

LIS1-interacting protein NUDE1, rat homolog

NUDE1

16p13.11

NM_017668.1

Hs.263925

56.8

Above

2.0

68

226037_s_at

TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa

TAF9L

Xq13.1-q21.1

AL049589

Hs.171723

56.8

Above

1.9

69

227279_at

hypothetical protein MGC15737

MGC15737

Xq22.1

AA847654

Hs.39122

56.8

Above

5.6

70

200600_at

Moesin (membrane organizing extension spike protein)

MSN

Xq11.2-q12

NM_002444.1

Hs.170328

56.2

Above

1.9

71

200701_at

Niemann-Pick disease, type C2

NPC2

14q24.3

NM_006432.1

Hs.119529

55.9

Above

1.7

72

200737_at

phosphoglycerate kinase 1

PGK1

Xq13

NM_000291.1

Hs.78771

55.9

Above

1.8

73

201642_at

interferon gamma receptor 2 (interferon gamma transducer 1)

IFNGR2

21q22.11

NM_005534.1

Hs.177559

55.9

Above

2.5

74

214527_s_at

polyglutamine binding protein 1

PQBP1

Xp11.23

AB041836.1

Hs.30570

55.9

Above

1.7

75

223082_at

SH3-domain kinase binding protein 1

SH3KBP1

Xp22.1-p21.3

AF230904.1

Hs.153260

55.9

Above

2.0

76

225182_at

Homo sapiens EST from clone 491476, full insert

   

AL355685.1

Hs.9042

55.9

Above

2.1

77

226760_at

Homo sapiens cDNA FLJ32174 fis, clone PLACE6001064

   

BF666325

Hs.297007

55.9

Above

2.2

78

204572_s_at

protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)

PIN4

Xq13

NM_006223.1

Hs.11774

54.8

Above

2.9

79

201092_at

retinoblastoma binding protein 7

RBBP7

Xp22.31

NM_002893.2

Hs.31314

54.0

Above

1.6

80

204690_at

syntaxin 8

STX8

17p12

NM_004853.1

Hs.380938

54.0

Above

1.4

81

206016_at

JM1 protein

JM1

Xp11.23

NM_014008.1

Hs.26333

54.0

Above

2.3

82

218021_at

peroxisomal short-chain alcohol dehydrogenase

humNRDR

14q11.2

NM_021004.1

Hs.6318

54.0

Above